PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB11G12310.1

Common Name

LOC102703911

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 445aa MW: 48470.9 Da PI: 4.5451

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB11G12310.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	86.9	3.8e-27	38	172	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkya.tgkrknra.....tksgyWkatgkdke 91 p Gf F+Ptdeelv+ yL+ k+eg+k +l +v++ev+i+ ++P++L +k++a +e++w+f + r+ +++ ++ ++nr+ ++ g W+atg+ + OB11G12310.1 38 PSGFPFSPTDEELVDVYLRCKIEGRKAPL-DVVNEVNIMCYHPENLIEKYRAyGEHRWFFTMVREASKTkKKGEPNRKvkvddVEVGSWSATGSVVQ 133 89***********************99.99**********8665552556776666555544414668888745555559******* PP NAM 92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s+ +++ +g k++L+f ++ +e+ +W mhey + OB11G12310.1 134 IHSTkeanRKAIIGSKRVLTFKSA--IASEEDRWSMHEYVM 172 9866656666*******955..555599*****76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-30	32	189	IPR003441	NAC domain
PROSITE profile	PS51005	32.182	37	189	IPR003441	NAC domain
Pfam	PF02365	3.1E-16	38	171	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence Send to blast
MENGAGAGAI TQLIESGGGG GGPPAAKKEA LVVQLQFPSG FPFSPTDEEL VDVYLRCKIE 60 GRKAPLDVVN EVNIMCYHPE NLIEKYRAYG EHRWFFTMVR EASKTKKKGE PNRKVKVDDV 120 EVGSWSATGS VVQIHSTKEA NRKAIIGSKR VLTFKSAIAS EEDRWSMHEY VMAGKSEMGQ 180 YVLCAIQLKQ TYEAEKKAAE DGKKHNRRTR KAKRVAAMGE AQEEGQHETP PPEEDVCTSM 240 ASMFAAEEDV CTSMTSMFAA EEDAAMADAN DGMAQADHQS SESYAAMCSE AEPVYYADQF 300 AFAAPDDSSS CGGGNCLSYQ HPATGSAASA GQAQYHVQYY QICSQDGGNM GVCSTNAGLH 360 YNMLMGGQVQ NQICSQGNVG VIGGSEDWTA FHVAVSCDQL IAAQQVERLP IGDMSSRTYF 420 QDTDMNDFKD IFGDDDNVEI PNQWE

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence Send to blast

MENGAGAGAI TQLIESGGGG GGPPAAKKEA LVVQLQFPSG FPFSPTDEEL VDVYLRCKIE  60
GRKAPLDVVN EVNIMCYHPE NLIEKYRAYG EHRWFFTMVR EASKTKKKGE PNRKVKVDDV  120
EVGSWSATGS VVQIHSTKEA NRKAIIGSKR VLTFKSAIAS EEDRWSMHEY VMAGKSEMGQ  180
YVLCAIQLKQ TYEAEKKAAE DGKKHNRRTR KAKRVAAMGE AQEEGQHETP PPEEDVCTSM  240
ASMFAAEEDV CTSMTSMFAA EEDAAMADAN DGMAQADHQS SESYAAMCSE AEPVYYADQF  300
AFAAPDDSSS CGGGNCLSYQ HPATGSAASA GQAQYHVQYY QICSQDGGNM GVCSTNAGLH  360
YNMLMGGQVQ NQICSQGNVG VIGGSEDWTA FHVAVSCDQL IAAQQVERLP IGDMSSRTYF  420
QDTDMNDFKD IFGDDDNVEI PNQWE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-13	32	191	12	167	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-13	32	191	12	167	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-13	32	191	12	167	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-13	32	191	12	167	NO APICAL MERISTEM PROTEIN
3swm_A	1e-13	32	191	15	170	NAC domain-containing protein 19
3swm_B	1e-13	32	191	15	170	NAC domain-containing protein 19
3swm_C	1e-13	32	191	15	170	NAC domain-containing protein 19
3swm_D	1e-13	32	191	15	170	NAC domain-containing protein 19
3swp_A	1e-13	32	191	15	170	NAC domain-containing protein 19
3swp_B	1e-13	32	191	15	170	NAC domain-containing protein 19
3swp_C	1e-13	32	191	15	170	NAC domain-containing protein 19
3swp_D	1e-13	32	191	15	170	NAC domain-containing protein 19
4dul_A	1e-13	32	191	12	167	NAC domain-containing protein 19
4dul_B	1e-13	32	191	12	167	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB11G12310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ378032	0.0	FQ378032.1 Oryza brachyantha chromosome 11.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015697555.1	0.0	PREDICTED: putative NAC domain-containing protein 94
TrEMBL	J3N5Z5	0.0	J3N5Z5_ORYBR; Uncharacterized protein
STRING	OB11G12310.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11556	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22290.1	4e-19	NAC domain containing protein 89

Link Out ? help Back to Top
Entrez Gene	102703911