PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G11290.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 335aa    MW: 36503 Da    PI: 6.3413
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G11290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.7e-175097148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
     OB11G11290.1 50 KGPWTPEEDIILVSYIQEHGPGNWRSVPINTGLMRCSKSCRLRWTNYL 97
                     79********************************************97 PP
2Myb_DNA-binding46.49.4e-15103148148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E+ ++v++  +lG++ W++Ia++++  Rt++++k++w+++l
     OB11G11290.1 103 RGNFTAHEEGIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 148
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-2342100IPR009057Homeodomain-like
PROSITE profilePS5129425.51745101IPR017930Myb domain
SuperFamilySSF466899.36E-3047144IPR009057Homeodomain-like
SMARTSM007174.4E-134999IPR001005SANT/Myb domain
PfamPF002491.3E-155097IPR001005SANT/Myb domain
CDDcd001671.09E-115297No hitNo description
Gene3DG3DSA:1.10.10.601.4E-23101152IPR009057Homeodomain-like
PROSITE profilePS5129418.443102152IPR017930Myb domain
SMARTSM007174.1E-13102150IPR001005SANT/Myb domain
PfamPF002491.8E-12103148IPR001005SANT/Myb domain
CDDcd001671.53E-9105148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009416Biological Processresponse to light stimulus
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010118Biological Processstomatal movement
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MHTVGSSGST ERDDRSSILA RVSSIDPAGS ELAELAMGRP PRCDKEGIKK GPWTPEEDII  60
LVSYIQEHGP GNWRSVPINT GLMRCSKSCR LRWTNYLRPG IKRGNFTAHE EGIIVHLQSL  120
LGNRWAAIAS YLPQRTDNDI KNYWNTHLKK KLAAASSTSS SRHPIFADAT FPSAAGSSSS  180
EVTHQMQAIA ARRSPFADCP SSSYASSMDN ISKLLDGFMK TAPPSPPPPP LQHYDSGCYD  240
VKPSVVDVGN PLLSFHCMSG TDDLDCFDVH QQASFMDQYG GDVGRGGAQD QTPQGRRPPP  300
PLSSIEKWLF DEAAAEQVAD LMDLSDGCCS VPMMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-26501524105C-Myb DNA-Binding Domain
1msf_C1e-26501524105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00132DAPTransfer from AT1G08810Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G11290.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0614370.0AK061437.1 Oryza sativa Japonica Group cDNA clone:006-307-B04, full insert sequence.
GenBankAK2415490.0AK241549.1 Oryza sativa Japonica Group cDNA, clone: J065176M15, full insert sequence.
GenBankY113520.0Y11352.1 O.sativa mRNA for myb factor, 1308 bp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662698.10.0PREDICTED: myb-related protein 306-like
SwissprotB3VTV72e-91MYB60_VITVI; Transcription factor MYB60
TrEMBLJ3N5P30.0J3N5P3_ORYBR; Uncharacterized protein
STRINGOB11G11290.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.13e-85myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]