PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB11G11230.1
Common NameLOC102705756
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 374aa    MW: 41027 Da    PI: 7.7252
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB11G11230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.38.9e-51201511128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.. 95 
                   lppGfrFhPtd+e++  yL +k  + +++    i +vd++k+ePwdLp+k++ +ekew+fF+++  ky+tg r+nratk+gyWkatgkd+e+++   
  OB11G11230.1  20 LPPGFRFHPTDDEVILSYLLQKFLNPSFTS-LPIGDVDLNKCEPWDLPSKARMGEKEWFFFAHKGMKYPTGLRTNRATKEGYWKATGKDREIFKPss 115
                   79*************************888.56***************999999***************************************9877 PP

           NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ lvg+kktLvfykgrapkg+kt+Wvmhe+rl
  OB11G11230.1 116 nggSKPLVGMKKTLVFYKGRAPKGSKTNWVMHEFRL 151
                   6544455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5818178IPR003441NAC domain
PROSITE profilePS5100554.84920178IPR003441NAC domain
PfamPF023653.4E-2521151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MVETANSLVK SEQDGVGLFL PPGFRFHPTD DEVILSYLLQ KFLNPSFTSL PIGDVDLNKC  60
EPWDLPSKAR MGEKEWFFFA HKGMKYPTGL RTNRATKEGY WKATGKDREI FKPSSNGGSK  120
PLVGMKKTLV FYKGRAPKGS KTNWVMHEFR LHANLHNHNP NLRLNPKDEW VVCKVFHKKG  180
DEATKMEATT VEDSAGNPNK DSSVEPCDDI ADYFFELDSV DPSIYFSSPA ASSSLSAPPD  240
NDAVPYSSVA ANGATPTTTT TGTTNGSFQL PNYSVSGVSS WNIMPTPGAA AGVVLHGHGS  300
SYSLQHQAAM VKALEDAIRV PDFGTVQLPS SFRNWGSSTR SVTATAGALQ QNYPLGMPHY  360
KLQNYGDTYL RDRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-471817918169NAC domain-containing protein 19
3swm_B4e-471817918169NAC domain-containing protein 19
3swm_C4e-471817918169NAC domain-containing protein 19
3swm_D4e-471817918169NAC domain-containing protein 19
3swp_A4e-471817918169NAC domain-containing protein 19
3swp_B4e-471817918169NAC domain-containing protein 19
3swp_C4e-471817918169NAC domain-containing protein 19
3swp_D4e-471817918169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB11G11230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006662693.10.0PREDICTED: NAC domain-containing protein 77-like
SwissprotQ5CD171e-152NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLJ3N5N70.0J3N5N7_ORYBR; Uncharacterized protein
STRINGOB11G11230.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.26e-72Arabidopsis NAC domain containing protein 87