PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G24340.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 176aa    MW: 20597.4 Da    PI: 10.2705
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G24340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1023.9e-321972255
       G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                  prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR 
  OB10G24340.1 19 PRLRWTPDLHHCFVHAIHKLGGQHKATPKRVLQLMGVGGLTISHVKSHLQMYRN 72
                  8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8941575IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-311574IPR009057Homeodomain-like
SuperFamilySSF466895.38E-161773IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-251972IPR006447Myb domain, plants
PfamPF002492.1E-102071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MVRGERIEGV RQYNRSKVPR LRWTPDLHHC FVHAIHKLGG QHKATPKRVL QLMGVGGLTI  60
SHVKSHLQMY RNMRNDDLEM QGIQQMDQEQ TFAGGMQIWT DMKQQDHHHE CNGPYCRCHS  120
SSKHARGSLL LLHQQQQQQL QRPNRMETRQ EVSTRTGFLR SEGIRERDLQ QYGLAV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J5e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G24340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126183e-66CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876554.14e-98uncharacterized protein LOC112936623 isoform X1
TrEMBLJ3N4I61e-127J3N4I6_ORYBR; Uncharacterized protein
STRINGOB10G24340.11e-128(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.14e-32G2-like family protein