PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G20600.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 841aa    MW: 92363.5 Da    PI: 5.5968
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G20600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.4e-192785357
                  --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
      Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                  k  ++t+eq+e+Le++++++++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  OB10G20600.1 27 KYVRYTPEQVEALERVYAECPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 85
                  5678****************************************************996 PP
2START1632.1e-511653722204
                   HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEE CS
         START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmva 96 
                   +aee+++e+++ka+ ++  Wv ++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+   +  g  g+++l+++
  OB10G20600.1 165 IAEETLAEFLSKATGTAVDWVPMPGMKPGPDSFGIVAISHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTGVPAGngGTIELIYM 260
                   7899******************************************************9999999999.***************99999******** PP

                   XXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHH CS
         START  97 elqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksgl 189
                   +++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+l++s++
  OB10G20600.1 261 QMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRPLYESSR 357
                   ************************************9999998888899************************************************ PP

                   HHHHHHHHHHTXXXX CS
         START 190 aegaktwvatlqrqc 204
                   + ++k+++a+l++ +
  OB10G20600.1 358 VVAQKMTTAALRHIR 372
                   ***********9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-19782IPR009057Homeodomain-like
PROSITE profilePS5007115.6292286IPR001356Homeobox domain
SMARTSM003892.9E-162490IPR001356Homeobox domain
SuperFamilySSF466891.41E-162690IPR009057Homeodomain-like
CDDcd000866.81E-172787No hitNo description
PfamPF000462.5E-162885IPR001356Homeobox domain
CDDcd146862.09E-679118No hitNo description
Gene3DG3DSA:1.20.5.1704.5E-483133No hitNo description
PROSITE profilePS5084827.127155383IPR002913START domain
CDDcd088752.20E-73161375No hitNo description
SMARTSM002348.8E-41164374IPR002913START domain
Gene3DG3DSA:3.30.530.208.0E-21164350IPR023393START-like domain
PfamPF018522.2E-49165372IPR002913START domain
SuperFamilySSF559611.03E-35165376No hitNo description
PfamPF086702.8E-48698840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MAAAVAMRSG SGSEGGGYDK AGMDSGKYVR YTPEQVEALE RVYAECPKPS SSRRQQLLRE  60
CPILANIEPK QIKVWFQNRR CRDKQRKEAS RLQAVNRKLT AMNKLLMEEN ERLQKQVSQL  120
VHENAYMKQQ LQNPSLANDT SCESNVTTPQ NALRDASNPT GLLTIAEETL AEFLSKATGT  180
AVDWVPMPGM KPGPDSFGIV AISHGCRGVA ARACGLVNLE PTKIVEILKD RPSWFRDCRS  240
LEVFTGVPAG NGGTIELIYM QMYAPTTLVP ARDFWTLRYT TTMEDGSLVV CERSLSGSGG  300
GPSTASAQQF VRAEMLPSGY LVRPCEGGGS IVHIVDHLDL EAWSVPEVLR PLYESSRVVA  360
QKMTTAALRH IRQIAQETSG EVVYALGRQP AVLRTFSQRL SRGFNDAISG FNDDGWSVMG  420
GDGIEDVIIA CNSKKVRNTS TIANAFGPPG GVICAKASML LQSVPPAVLV RFLREHRSEW  480
ADYNFDAYSA SSLKTSSCSL PGLRPMRFSG SQIIMPLAHT VENEEILEVV RLEGQALTHD  540
DGLLSRDIHL LQLCTGIDEK SMGSCFQLVF APIDELFPDD APLISSGFRV IPLDMKTCFP  600
QDGAPTGRTL DLASSLEVGS TTQPTGDATL DDCNLRSVLT IAFQFPYEMH LQDSVATMAR  660
QYVRSIVSSV QRVSMAISPR SGLNAGQKII SGFPEAPTLA RWICQSYQFH LGVELLRQAD  720
DAGELLLKML WDYEDAILCC SFKEKPVFTF ANEMGLNMLE TSLVALQDLS LDKIFDEAGR  780
KALYNEIPKL MEQGYAYLPG GVCLSGMGRH VSFEQAVAWK VLGEDNSVHC LAFCFVNWSF  840
V
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G20600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1028300.0AK102830.1 Oryza sativa Japonica Group cDNA clone:J033109G06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006661867.10.0PREDICTED: homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLJ3N3G20.0J3N3G2_ORYBR; Uncharacterized protein
STRINGOB10G20600.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein