PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G17680.1
Common NameLOC102711467
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 451aa    MW: 48313.2 Da    PI: 7.0229
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G17680.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.81.7e-26191502127
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   p GfrF+P d elv e L  k++g++   + +++++ev+i++++P +L  + ++ ee+  +yfFs+r+ ++ ++kr+ r+++ g W++tg +    +
  OB10G17680.1  19 PSGFRFKPFDLELV-EILDDKLHGRPldPTHNDIFHEVEILDFHPLQLYeTYADDEENgYIYFFSRRKFESCNKKRPLRSAEGGAWRSTGLKGVKSN 114
                   89************.89*********653445679*************8233333444355********999******************9654444 PP

           NAM  95 k.kgelvglkktLvfykg..rapkgektdWvmheyr 127
                   k ++++vglk+tLvf++    ++++++t+W mhe++
  OB10G17680.1 115 KsGDSDVGLKQTLVFHQCfpGDKEPVRTNWGMHEFT 150
                   457788**********7444667779********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.71E-3014169IPR003441NAC domain
PROSITE profilePS5100530.02118170IPR003441NAC domain
PfamPF023658.6E-1519150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAAPEDGEDK KGKNKHGTPS GFRFKPFDLE LVEILDDKLH GRPLDPTHND IFHEVEILDF  60
HPLQLYETYA DDEENGYIYF FSRRKFESCN KKRPLRSAEG GAWRSTGLKG VKSNKSGDSD  120
VGLKQTLVFH QCFPGDKEPV RTNWGMHEFT KIIGPRNEVA DHAVYRLYKM RKNGKETPAD  180
LAADAAATAS MNKRNRTERG QASAAGPSNQ APPPRNSWAL PRAPGPSNQA PPRAAGPSNS  240
RAPPGPSRFA PAPSNSGAPP RAPGPSNLAP PRTAGPSNFW APPGPSRFVP APSNSRAPPS  300
AQGPSNQAPP RTAGPSNSWV PPGPSRFAPA PSNSRAPLSA QGPSNSRAPP SAPAPRGHFA  360
PTDSRLRLVQ QPPIAASQVD EDPKEWEWVR QELEGDSSVA GEPLAEDELD DLMLSDDSAL  420
EESSGAQEGC NNAAADAARG DNNDDSAAGR R
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G17680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697238.10.0PREDICTED: translation initiation factor IF-2-like isoform X2
TrEMBLJ3N2M00.0J3N2M0_ORYBR; Uncharacterized protein
STRINGOB10G17680.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2202166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.13e-13NTM1-like 8