PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB10G16930.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 297aa    MW: 33758.4 Da    PI: 9.7583
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB10G16930.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM81.61.7e-25391782127
           NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya...tgkrknratksgyWkatgkdke 91 
                   p+Gf   P+d el+ + L+ k+ + k    l++v++e++i++++P  L +++++  e++ +yfFs+r+  ++   +++r+ rat+ g+Wka+g +k+
  OB10G16930.1  39 PVGFYMVPSDLELI-RMLRCKLLRGKlpGALNDVFHELRILDFHPAVLYSMYEKrmEDDYIYFFSRREYPAKagrNKRRPVRATNGGTWKASGGSKT 134
                   89************.5677776666634445678**************84333322555779**9998766633356677789************** PP

           NAM  92 vlsk...kgelvglkktLvfy.....kgrapkgektdWvmheyr 127
                   v +k   ++ +vg + t+vfy       ++ +++kt+W mhe+ 
  OB10G16930.1 135 VETKkggRDVAVGQRLTMVFYerrlgGDKKAESVKTNWGMHEFC 178
                   **997666667**********6655335788889********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-3332199IPR003441NAC domain
PROSITE profilePS5100530.88538200IPR003441NAC domain
PfamPF023653.8E-1439177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAALPPGDGE GGSGGGGGKE SKGKEKVVEE YGKNRHGQPV GFYMVPSDLE LIRMLRCKLL  60
RGKLPGALND VFHELRILDF HPAVLYSMYE KRMEDDYIYF FSRREYPAKA GRNKRRPVRA  120
TNGGTWKASG GSKTVETKKG GRDVAVGQRL TMVFYERRLG GDKKAESVKT NWGMHEFCKF  180
IPGSKNKELE DLAVYRLYKM GRKEEEQEAE EDEEVVEPST SASTEIPPQL PPAPQLLLEL  240
AGSSPPILAL PPPEGFDETW PDRRRRYWRC LHWRASTGGS RRRRCHCSRW RRAWLEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261266DRRRRY
2263283RRRYWRCLHWRASTGGSRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB10G16930.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696984.11e-138PREDICTED: uncharacterized protein LOC102703903
TrEMBLJ3N2E50.0J3N2E5_ORYBR; Uncharacterized protein
STRINGOB10G16930.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.14e-13NAC domain containing protein 64