PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G25800.1
Common NameLOC102720457
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 525aa    MW: 53931.1 Da    PI: 9.1223
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G25800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-056890123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C+ C+k F r  nL+ H r H
  OB09G25800.1 68 FVCEVCNKGFQREQNLQLHRRGH 90
                  89*******************88 PP
2zf-C2H212.60.00042144166123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C +C+k++  +s+ k H +t+
  OB09G25800.1 144 WRCDKCSKRYAVQSDWKAHSKTC 166
                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.31E-76790No hitNo description
Gene3DG3DSA:3.30.160.607.1E-66790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0946890IPR007087Zinc finger, C2H2
PfamPF121713.4E-56890IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00416890IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-4132165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.31E-7139164No hitNo description
SMARTSM00355150144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MAAASSAPFF GLGDTQMPPP GQNPNPALQP PPAAAPAPKK KRNQPGNPNP DAEVIALSPK  60
TLMATNRFVC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN PKEARRRVYL CPEPSCVHHD  120
PSRALGDLTG IKKHYCRKHG EKKWRCDKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALAQENV RVPPIGAGVY GCSGNISIGF SGAMTAPQLP PAGFSEQVGQ  240
PSASAGDVLR LGGGNAGVGV GGGSQFDHLM ASSSGASMFR SHGSSSSSYY LANAPHHAPA  300
QEYPEDGQAQ AGHGGSLLQG KPAAFHDLMQ LPVQHQQSSN GNILNLGFLS GSNGVDQFNG  360
SGGQGGIVTS GALAGSHLGG GGGGFPPLYN SSEQAGGLPQ MSATALLQKA AQIGATTSSY  420
TGGGGASSLL RGASAGGEGP TANERSYQNL ILGSMASGSG GAGYAAGSFA GASAFGGAVD  480
DGKLSTRDFL GVGVVQGMSG SAAMGPPRHG AAGLHVGSLD PENMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34140202365Zinc finger protein JACKDAW
5b3h_F3e-34140202365Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G25800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1011810.0AK101181.1 Oryza sativa Japonica Group cDNA clone:J033029F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660959.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
TrEMBLJ3N0010.0J3N001_ORYBR; Uncharacterized protein
STRINGOB09G25800.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-107C2H2-like zinc finger protein