PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OB09G24570.1 | ||||||||
Common Name | LOC102705558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 191aa MW: 20617.1 Da PI: 10.2233 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 56.9 | 4.5e-18 | 121 | 174 | 4 | 57 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++r +r++kNRe+A rsR+RK+a++ +Le +v++L++eNk+L+ + e+l+k+v+ OB09G24570.1 121 DRRKKRMIKNRESAARSRARKQARVNNLEAEVEQLKQENKMLRVKYEQLRKTVE 174 789************************************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.3E-12 | 118 | 185 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.944 | 120 | 174 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.6E-16 | 121 | 174 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 7.8E-16 | 121 | 174 | No hit | No description |
SuperFamily | SSF57959 | 9.38E-13 | 122 | 174 | No hit | No description |
CDD | cd14707 | 1.72E-20 | 122 | 172 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 125 | 140 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:2000028 | Biological Process | regulation of photoperiodism, flowering | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 191 aa Download sequence Send to blast |
MAMEDNEDMW ANTSSPSASP PGPTAGEGGF ISTALSLNST HLHGLLSSSF VAADPPSHAG 60 SNNDDSSGYR NAAPTSSFFP PASYHYHGHP LAPPPAPLDA ARRAFELNMC AAGAGAPAAG 120 DRRKKRMIKN RESAARSRAR KQARVNNLEA EVEQLKQENK MLRVKYEQLR KTVEVPVPVR 180 RTLQRVLSAP F |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | OB09G24570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT835908 | 1e-136 | CT835908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN083I14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006660911.2 | 1e-139 | PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 | ||||
TrEMBL | J3MZM8 | 1e-137 | J3MZM8_ORYBR; Uncharacterized protein | ||||
STRING | OB09G24570.1 | 1e-138 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9764 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17770.2 | 1e-09 | basic region/leucine zipper motif 27 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 102705558 |