PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB09G24010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | SRS | ||||||||
Protein Properties | Length: 187aa MW: 19061 Da PI: 5.1105 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 85.4 | 1.4e-26 | 53 | 113 | 93 | 153 |
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++++ + ++++P+evsseavfrcvr++ vd++e+e+aYqtavsigGhvfkGiL+d G+e OB09G24010.1 53 AGDQQMVTVAERFPREVSSEAVFRCVRLGPVDQAEAEVAYQTAVSIGGHVFKGILHDVGPE 113 567788888999***********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 2.6E-23 | 57 | 113 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 8.8E-23 | 64 | 112 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MAGFPLGGGS HSRDNPAPPV PPVHPTDAAS FLYATRGGSF QLWQQQEQQP PCAGDQQMVT 60 VAERFPREVS SEAVFRCVRL GPVDQAEAEV AYQTAVSIGG HVFKGILHDV GPEALAVAGG 120 SGAGAGEYQF RLTGDGSSPS TAAAGEAGSG SGNIIVSSAG GMDPYPTPGP YGAYPAGTPF 180 FHGHPRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB09G24010.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012617 | 1e-152 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006661471.1 | 1e-95 | PREDICTED: protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | J3MZH2 | 1e-130 | J3MZH2_ORYBR; Uncharacterized protein | ||||
STRING | OB09G24010.1 | 1e-131 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1354 | 35 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 1e-17 | Lateral root primordium (LRP) protein-related |