PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB09G23490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | ERF | ||||||||
Protein Properties | Length: 240aa MW: 27488 Da PI: 12.2599 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.6 | 2e-10 | 33 | 67 | 1 | 37 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfg 37 + y+GVr++ + grWv+e+r+p g + +r +lg+f OB09G23490.1 33 PVYRGVRRRGRAGRWVCEVRVP---GrRGTRLWLGTFA 67 68*******************9...6455*******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.7E-6 | 33 | 67 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 12.879 | 34 | 66 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-8 | 34 | 68 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.7E-13 | 34 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDMEEAHLEY RTVWSEPPKK PAGRTKFRET RHPVYRGVRR RGRAGRWVCE VRVPGRRGTR 60 LWLGTFAXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXRPCPSPPR 120 RPRLPPRRSP TTTTTTMTNT SCRCRRRPSF PTPRSSCSTT GSGSAGWTPG RTTRAWRMGC 180 SWSRRPPERG GRTASSPAPT CRSGATDLAG QQQKFCTNFG RICFPGNRVV GNFEQSRQWD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB09G23490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ810282 | 0.0 | DQ810282.1 Oryza brachyantha BAC 0002C07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3MZC0 | 2e-52 | J3MZC0_ORYBR; Uncharacterized protein | ||||
STRING | OB09G23490.1 | 3e-53 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 9e-13 | dehydration response element B1A |