PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G22520.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 101aa    MW: 11247.8 Da    PI: 8.2372
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G22520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.96.2e-17798163
           NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk.............................kvkaeekewyfFsk 63
                  lppGfrFhPtdeelvv+yL++++ +++l++  vi++v d   ++PwdLp                              ++ a+e e yfFs 
  OB09G22520.1  7 LPPGFRFHPTDEELVVQYLRRRALSRPLPA-AVIPDVhDAAVLDPWDLPGavscsvsrrqdrraaraeidrssfsgfslCAGAGEGEAYFFSF 98
                  79****************************.8999999***********54677777777776666666666666555444445556677665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-18457IPR003441NAC domain
PROSITE profilePS5100520.7497101IPR003441NAC domain
PfamPF023651.8E-9899IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MATLRQLPPG FRFHPTDEEL VVQYLRRRAL SRPLPAAVIP DVHDAAVLDP WDLPGAVSCS  60
VSRRQDRRAA RAEIDRSSFS GFSLCAGAGE GEAYFFSFRQ L
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G22520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126171e-58CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBankCT8303091e-58CT830309.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114J09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651404.14e-31NAC domain-containing protein 83
SwissprotO227982e-19NAC41_ARATH; NAC domain-containing protein 41
TrEMBLJ3MZ233e-66J3MZ23_ORYBR; Uncharacterized protein
STRINGOB09G22520.16e-67(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2278446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33480.12e-14NAC domain containing protein 41
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]