PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G21720.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 361aa    MW: 39895.4 Da    PI: 9.2925
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G21720.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1721.9e-53181601128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk............kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                   lppGfrFhPtdeel+++yL++k+++  +++ ++i+evd++k+ePwdLp                ++ekewyfFs rd+ky+tg r+nrat++gyWk+
  OB09G21720.1  18 LPPGFRFHPTDEELITYYLRQKIADGGFTA-RAIAEVDLNKCEPWDLPVvffrcfeahlsyLSLTREKEWYFFSLRDRKYPTGVRTNRATNAGYWKT 113
                   79*************************999.89***************55899888877652234889***************************** PP

           NAM  86 tgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   tgkdke+++     + elvg+kktLvfykgrap+gekt+Wvmheyrl
  OB09G21720.1 114 TGKDKEIFTGqppaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 160
                   ********9766666677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-6014181IPR003441NAC domain
PROSITE profilePS5100558.4518181IPR003441NAC domain
PfamPF023654.6E-2919160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MGTEGSGGGG SAKKEESLPP GFRFHPTDEE LITYYLRQKI ADGGFTARAI AEVDLNKCEP  60
WDLPVVFFRC FEAHLSYLSL TREKEWYFFS LRDRKYPTGV RTNRATNAGY WKTTGKDKEI  120
FTGQPPATPE LVGMKKTLVF YKGRAPRGEK TNWVMHEYRL HSKSIPKSNK DEWVVCRVFA  180
KTAGVKKYPS SNAHSRSHHP YALDMVPPLL PALLQQDPFG RGHHHPYMAP VDMAELSRFA  240
RGTPGLHPHI QPHPSYINPA ATPFTLSGLN LNLGSSPAAM APPPQSMLQA MSSMPMNQPS  300
TASQVMATEQ MVSGLANGVI PPGVDGGFST DAAVVGGGGI RYQNLDVEQL VERYWPGSYQ  360
M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-491718716171NO APICAL MERISTEM PROTEIN
1ut4_B2e-491718716171NO APICAL MERISTEM PROTEIN
1ut7_A2e-491718716171NO APICAL MERISTEM PROTEIN
1ut7_B2e-491718716171NO APICAL MERISTEM PROTEIN
4dul_A2e-491718716171NAC domain-containing protein 19
4dul_B2e-491718716171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00277DAPTransfer from AT2G24430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G21720.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1025110.0AK102511.1 Oryza sativa Japonica Group cDNA clone:J033095I08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660793.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FLJ26e-78NC100_ARATH; NAC domain-containing protein 100
TrEMBLJ3MYU30.0J3MYU3_ORYBR; Uncharacterized protein
STRINGOB09G21720.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93613846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.27e-81NAC domain containing protein 38
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]