PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G21580.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 908aa    MW: 100178 Da    PI: 4.3582
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G21580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM39.61.6e-12953248
           NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48
                  ppGfrF+Ptdeelv ++Lk+++++ + +    i++vd+yk++P++Lp
  OB09G21580.1  9 PPGFRFSPTDEELVLYFLKRRIATGRPTP--YIADVDVYKSHPSHLP 53
                  8*********************9999555..6*************98 PP
2NAM53.67.6e-175410381128
           NAM  81 gyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   gyWkatgkd+ +++   +g++vg kktLv+++grap+ge+tdWvmhey++
  OB09G21580.1  54 GYWKATGKDRCICNGgaSGRAVGSKKTLVYHHGRAPRGERTDWVMHEYTI 103
                   9************98777888***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.171126IPR003441NAC domain
SuperFamilySSF1019415.1E-356126IPR003441NAC domain
PfamPF023658.9E-189103IPR003441NAC domain
HamapMF_0147717.671787894IPR004394Protein Iojap/ribosomal silencing factor RsfS
SuperFamilySSF813015.89E-25795903No hitNo description
Gene3DG3DSA:3.30.460.101.4E-24799896No hitNo description
PfamPF024101.2E-17800893No hitNo description
TIGRFAMsTIGR000904.4E-20800893IPR004394Protein Iojap/ribosomal silencing factor RsfS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 908 aa     Download sequence    Send to blast
MESPPVRWPP GFRFSPTDEE LVLYFLKRRI ATGRPTPYIA DVDVYKSHPS HLPGYWKATG  60
KDRCICNGGA SGRAVGSKKT LVYHHGRAPR GERTDWVMHE YTILADALPP AARDREAFAL  120
YKLFHKSGAG PKNGEQYGAP FREEDWLDDE EEEIAAAETD RPAATTTSGR AATVEELTDF  180
EFSSEDLDVL LMQIGNEQEI IEDPRSDLST PVSCQVQIQH GIHQGWLNDD LGKSDAADAT  240
TSGSALSMAE NAGTELPING LEQLLMQISD DQQTVEMFSG FSTSIPQFQL QHEERQVGVH  300
SEEIGLADST SVISAVVTAE CTGPELRDIE GLLMQTENDQ ENAESLPDLS TPAPLHGCHQ  360
VASGDFQGSQ QATFSIANLS TMVQEIPKFD LQTGPSNQIA QSILTTEPMS GETNTDEETS  420
ALRSMSGLSS YDRQDADDEF LEINDFFDPK DLEYIMGNTT SQNLIPTDDG VFDSLKYSDA  480
PIFLPGSFDT TGVVAENQYV ECGASGIHNQ EFPHTTESWT HNQVALNVRS HMNDNHVVFS  540
SHRSDTSIIH TVNEEPPNRS SNTSQSWFNA ALSSLLDSVP SSPAMAAENI GLNRTLQRIS  600
SFRSQQTARE EVSTTVIHTR RRGGGLILIS LVVLFAAIMW TFTNGSSPKL CKGLWMYSDL  660
SPVILVVNPP YNFYPQALIL VLLSFPLSLP IEKGDKFEFG SDKWQDDIVR FPFEANKYFS  720
FNQSAGLLQF KTIHHMNTCS CIVSLALLVR LSQNSGRGDD ADNLLEDLLN KHGDVVYSAS  780
GAPGIEADDD AECLSFAVSL AKVASEVKAA DIRVLFVKPL VYWTRFFIIL TAFSNAQIDA  840
ISSKMRDIGE KQFSIVASGD TKPNSWTLLD FGDVVVHIFL PQQRAFYNLE EFYGNATTIE  900
LPFESQLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-24910316140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G21580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0685010.0AK068501.1 Oryza sativa Japonica Group cDNA clone:J013155B08, full insert sequence.
GenBankAK0992370.0AK099237.1 Oryza sativa Japonica Group cDNA clone:J013112C23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696399.10.0PREDICTED: NAC domain-containing protein 16-like
TrEMBLJ3MYS90.0J3MYS9_ORYBR; Uncharacterized protein
STRINGOB09G21580.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34190.15e-43NAC domain containing protein 17