PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB09G21260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 585aa MW: 65055.5 Da PI: 7.1229 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.5 | 4.4e-11 | 197 | 240 | 1 | 41 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeae 41 e++ k rr+++NReAAr+sR+RKka+i++Le + ++Le+e OB09G21260.1 197 ERDPKTLRRLAQNREAARKSRLRKKAYIQQLESsriRLAQLEQE 240 6777999************************9633355555555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.9E-8 | 195 | 245 | No hit | No description |
SMART | SM00338 | 4.5E-7 | 197 | 260 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.1E-8 | 198 | 240 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.082 | 199 | 241 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.5E-7 | 201 | 242 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 204 | 219 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 6.3E-28 | 299 | 373 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 585 aa Download sequence Send to blast |
MMSGSESRQE RQHQHQHQHQ HHQEMNISFG MMNHHYGAQH HHHPPPSSSS SSSMHAAAAS 60 FMSTKEASAG AYDHLGELDQ ALFMYLDHGN HAPSTHQEQR QTLNIFPSQP MHVEPSPKGE 120 ISLVLSPAPV GSKIPRSPDD HHHHHQQQAA MEELATGSRR QDHHLQHQPF GAEPAGINRD 180 VKPVAAKDHR RGASTGERDP KTLRRLAQNR EAARKSRLRK KAYIQQLESS RIRLAQLEQE 240 LHTARAQGVF FPGSSGLLAE PGVAGKGVPL GGIDGALSSE AAMFDVEYGR WQEEHYRLMY 300 ELRAALQQHL PEGELQMYVE SCLAHHDEVA AIKDGVIKGD VFHLISGVWR SPAERCFLWL 360 GGFRPSEVIK MLLAHVEPLT EQQIVGVYGL QQSALETEEA LTQGLDALYQ SLSDTVVSDA 420 LSCPANVANY MGQMAVAMNK LSTLEGFVRQ AENLRQQTLH RLQQVLTTRQ MARSLLAVSD 480 YFHRLRTLSS LWVTRPRQPP QDQQQSGGPP TRSPPPPGAX XXXXXXXXXX XXXXXXXXXX 540 XXXXXXXXXP AAGPAAERRP PHLIAAAAGA GRDDDDRNEM MTPFS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00491 | DAP | Transfer from AT5G06839 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB09G21260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU966928 | 0.0 | EU966928.1 Zea mays clone 298194 DNA binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696815.1 | 0.0 | PREDICTED: transcription factor TGA2-like | ||||
Swissprot | Q52MZ2 | 1e-169 | TGA10_TOBAC; bZIP transcription factor TGA10 | ||||
TrEMBL | J3MYP7 | 0.0 | J3MYP7_ORYBR; Uncharacterized protein | ||||
STRING | OB09G21260.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7876 | 35 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 1e-145 | bZIP family protein |