PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB09G20400.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Dof

Protein Properties

Length: 213aa MW: 22330 Da PI: 10.2296

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB09G20400.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	65.9	6.6e-21	45	78	29	62
zf-Dof 29 PryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 Pr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +ss OB09G20400.1 45 PRHFCKSCRRYWTKGGSLRNVPVGGGSRKSSSSS 78 9****************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50884	15.063	23	76	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-8	45	70	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-15	45	76	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MGGTIDPCRC RCPSPLLRHT ATRRRPQPSE WGGSRCRMGP RGGWPRHFCK SCRRYWTKGG 60 SLRNVPVGGG SRKSSSSSSS PASPPAKSPK RSKNSKRRRV SPPPPEPTPT PHTTTDTTTT 120 TTTAADVAAP TGPQASAKEA PEHLAVAPTQ PAEGGGGFTD PSVALGLGLA DAGGGKELLD 180 SSPFEWPSGC DLGPYWPTGV FADTDPSLFL NMP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	99	KRRRV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB09G20400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005759	2e-49	AP005759.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0556A05.
GenBank	AP014965	2e-49	AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBank	CP012617	2e-49	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
GenBank	CT835890	2e-49	CT835890.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN015F07, full insert sequence.
GenBank	KC996733	2e-49	KC996733.1 Oryza sativa transcription factor Dof25 (Dof25) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006661345.1	1e-115	PREDICTED: dof zinc finger protein MNB1A-like, partial
TrEMBL	J3MYG1	1e-149	J3MYG1_ORYBR; Uncharacterized protein
STRING	OB09G20400.1	1e-149	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21270.1	4e-12	DOF zinc finger protein 2