PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB09G14940.1

Common Name

LOC102707060

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 293aa MW: 31199.3 Da PI: 5.4726

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB09G14940.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	76.1	6.3e-24	1	83	18	100
DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +apyfpa+q+++f n+h+lFG++n++++l++++++ ++dam++l+yeA+ ra dPv Ga++vi++ +++++l +el++++e+ OB09G14940.1 1 MAPYFPADQQRRFLNAHRLFGVRNIQRTLQRTRPDLQSDAMQALTYEANSRAADPVGGAARVISEPAEHYKTLCKELVAVHEK 83 59****************************************************************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.17	1	84	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-21	1	81	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MAPYFPADQQ RRFLNAHRLF GVRNIQRTLQ RTRPDLQSDA MQALTYEANS RAADPVGGAA 60 RVISEPAEHY KTLCKELVAV HEKLELCRPQ QAAAAAARDT LIANDPLADP ASAMLFAGAG 120 AVAGPSQNEE DAMVDAFYAD QPAVGESSNV QAGGGFQEQY IKDESQVQPP PQQHYEHLYH 180 GAAGDEGSSH AWISSVVGNV QHCGDGEEQP MGLSDQLRPH FQIEAAAFDV KAAALARTTD 240 QHHGNATFKQ PEQKVVASSS AAAAGSSSSS AAHCQLQFGC SSNAWNNVGA HVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-12	1	84	28	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-12	1	84	28	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB09G14940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240652	9e-31	AK240652.1 Oryza sativa Japonica Group cDNA, clone: J023098G11, full insert sequence.
GenBank	AP005388	9e-31	AP005388.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04.
GenBank	AP014964	9e-31	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBank	CP012616	9e-31	CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006661168.2	0.0	PREDICTED: LOB domain-containing protein 20-like
TrEMBL	J3MWW5	0.0	J3MWW5_ORYBR; Uncharacterized protein
STRING	OB09G14940.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18293	10	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72980.1	1e-18	LOB domain-containing protein 7

Link Out ? help Back to Top
Entrez Gene	102707060