PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G13350.1
Common NameLOC102708462
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 354aa    MW: 39697.3 Da    PI: 5.4791
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G13350.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-1576125154
           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                   s+y+GVr++  +g+W+AeIrd +     r  r ++g+f ++eeAa+a+ a  ++++
  OB09G13350.1  76 SKYRGVRRRA-WGKWAAEIRDpV-----RkSRKWIGTFNSEEEAAAAYLAQSNQFH 125
                   89*****777.**********44.....55******************88666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.28E-1476109No hitNo description
PfamPF008471.7E-976119IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-1676128IPR016177DNA-binding domain
SMARTSM003808.0E-1577147IPR001471AP2/ERF domain
PROSITE profilePS5103218.68977134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1977120IPR001471AP2/ERF domain
PRINTSPR003671.8E-87889IPR001471AP2/ERF domain
PRINTSPR003671.8E-8100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMVPSSQKIR IFCSDPDATD SSDDDDQSAN KDRKDKIMIR EILFSMDNSK ESKTVVKTLV  60
QRDTETFKGT EKEPTSKYRG VRRRAWGKWA AEIRDPVRKS RKWIGTFNSE EEAAAAYLAQ  120
SNQFHAEMMA LKGQSSVSER EDLSSSVTIS CVSSSQSCEQ KIQAQPQAHK RQAHKKLSHS  180
CEQKIQAQPQ ANKRVLAGIN LETVEQKVQA QPQANKRASA GINLETVEQK IQAQPQTHKR  240
LLVEINHETV DENLPNVSST HKCKEISVDA SLGQIDEVPT SNFVSHANEF RQIDVFPVSD  300
FVGMTDEPPG DDYIGLADIS HLPLPTQDPK FDLDAELNWD GFDFASLEQL LNVL
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G13350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660528.10.0PREDICTED: uncharacterized protein LOC102708462
RefseqXP_015696880.10.0PREDICTED: uncharacterized protein LOC102708462
TrEMBLJ3MWF60.0J3MWF6_ORYBR; Uncharacterized protein
STRINGOB09G13350.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.11e-18ERF domain protein 10