PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G13080.1
Common NameLOC102706317
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 157aa    MW: 17641.7 Da    PI: 9.8043
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G13080.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.54e-153183355
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1  3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55
                  e+kr rrk++NRe+ArrsR RK++ ++eL+  v +L+++N++L   l   +++
  OB09G13080.1 31 ERKRKRRKESNRESARRSRMRKQQHLDELTSQVNQLKSQNQQLSMALGLTTQN 83
                  79*****************************************9877766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.5E-122577No hitNo description
SMARTSM003389.0E-162993IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.3693194IPR004827Basic-leucine zipper domain
PfamPF001706.7E-123178IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.44E-123386No hitNo description
CDDcd147021.26E-153482No hitNo description
PROSITE patternPS0003603651IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MSSGTSSGWS RGTRSSRSED DHELNLQAQM ERKRKRRKES NRESARRSRM RKQQHLDELT  60
SQVNQLKSQN QQLSMALGLT TQNLVAVQAQ NSVLQTQKME LQSRLCALTE ILMCMNSSTT  120
TTTSAATTIP ATASACDVFG ASSWNQTPID LYQYQCF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13136RKRKRR
23137RKRKRRK
33138RKRKRRKE
43237KRKRRK
53338RKRRKE
64552RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G13080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0649031e-150AK064903.1 Oryza sativa Japonica Group cDNA clone:J013000L18, full insert sequence.
GenBankAK0723601e-150AK072360.1 Oryza sativa Japonica Group cDNA clone:J023058F04, full insert sequence.
GenBankAK0988691e-150AK098869.1 Oryza sativa Japonica Group cDNA clone:J013001A19, full insert sequence.
GenBankCT8330391e-150CT833039.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA019A05, full insert sequence.
GenBankCT8330401e-150CT833040.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105H15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660520.11e-112PREDICTED: ocs element-binding factor 1-like
SwissprotC0Z2L53e-25BZP44_ARATH; bZIP transcription factor 44
TrEMBLJ3MWC91e-110J3MWC9_ORYBR; Uncharacterized protein
STRINGOB09G13080.11e-111(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37403276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-12basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]