PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB09G12290.1
Common NameLOC102722519
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bZIP
Protein Properties Length: 477aa    MW: 52368.2 Da    PI: 7.4508
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB09G12290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.71.8e-11190218533
                   CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
        bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                   k  rr+++NReAAr+sR+RKka+i++Le 
  OB09G12290.1 190 KTLRRLAQNREAARKSRLRKKAYIQQLES 218
                   6789***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.4E-5186248IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.795188230IPR004827Basic-leucine zipper domain
PfamPF077162.5E-8188229IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.3E-8189233No hitNo description
SuperFamilySSF579592.5E-7190224No hitNo description
PROSITE patternPS000360193208IPR004827Basic-leucine zipper domain
PfamPF141441.6E-26275347IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MVGSGDQEED RQQHHHHHHH HLLPSELPLG FRAGSRPASP AAMIASSSMS KESSSYDMAD  60
FDQASLFLYL DSHDQQSIQE QRQTLNIFPS QPMHVADPVH EAKSAGVAMA MLPNGNQLQV  120
LPSPNKSPDQ QGGQKITSSA PTNPSSPNLP LPNSAKDNKT SLIKKEGTSS GKGATSSDPE  180
IEGRRILDPK TLRRLAQNRE AARKSRLRKK AYIQQLESSR IRLSQLEQQV HAARVQGALL  240
GTGDQHQVLP SGPSAASLFD MEYGRWVEEH SKLIFQLRAA LNEQMAESQL QVFVSGAMAQ  300
HDELLSLKGA IARADIFHLL CGVWASPAER CFLWLGGFRP SEAIKVMLKQ VEPVSEGQLM  360
SIYELQQSVK GTEDALSHAM DSLHHSLSDT VAAPDVAGAG GFMGHMSLAI NKISAMEDIV  420
RQADGLRQQT LHKLQHMLTV RQAARCFVAI SDYFHRLRAL STLWVARPRQ EEGGPAM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB09G12290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1069880.0AK106988.1 Oryza sativa Japonica Group cDNA clone:002-120-A05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696803.10.0PREDICTED: transcription factor TGA2-like isoform X1
SwissprotQ6H4340.0TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBLJ3MW500.0J3MW50_ORYBR; Uncharacterized protein
STRINGOB09G12290.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-125bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]