PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G30590.1
Common NameLOC102710047
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 665aa    MW: 72670.6 Da    PI: 4.3154
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G30590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.55.1e-53231501128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   l+pGfrFhPtdeelv++yLk+kv g++l++ ++i+evd+yk+ePwdLp+  ++++++++wyfFs+ d+k+a+  r+nrat++gyWk+tgkd+ev + 
  OB08G30590.1  23 LAPGFRFHPTDEELVSYYLKRKVLGRPLKV-DAIAEVDLYKLEPWDLPArsRLRSRDSQWYFFSRLDRKHANRARTNRATAAGYWKTTGKDREVRH- 117
                   579***************************.99***************4357888999**************************************. PP

           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   + ++vg+kktLvf+ grapkge+t+Wvmheyrl
  OB08G30590.1 118 GPRTVGMKKTLVFHAGRAPKGERTNWVMHEYRL 150
                   999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-6016176IPR003441NAC domain
PROSITE profilePS5100558.48623176IPR003441NAC domain
PfamPF023651.2E-2825150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009819Biological Processdrought recovery
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0010150Biological Processleaf senescence
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MTHQPSSSSS SAAAPAPAEA TSLAPGFRFH PTDEELVSYY LKRKVLGRPL KVDAIAEVDL  60
YKLEPWDLPA RSRLRSRDSQ WYFFSRLDRK HANRARTNRA TAAGYWKTTG KDREVRHGPR  120
TVGMKKTLVF HAGRAPKGER TNWVMHEYRL DAGDPDPPAS TAIPQDSFVV CRIFQKAGPG  180
PQNGAQYGAP FVEEEWEEDE DDVGLLPVEE EKDKENSGDQ ELPGAMEKGY LQMSDLVQNL  240
GDRNENGTIA LPVSDNSNNS NNSEDVDGNP GDILNDQNLG SNFLQYVDPV EQNGFVLNEN  300
MLSNASVGDL FNRTSPNDGF LELKDFADIA NLENPSGNES TIWPSDGWPW KSLDSVEAVN  360
GAGSEFSAFA GEQTFQPEEL EQLLQSLQED SNMGSAISDP PHSFITNLPK PEDDSLMFYD  420
APFDSTICDD SFRQLNGFLG SPSTILSGID MVDDGMMYYD AIDDNLFNDL LGSVQPSAGS  480
SSHAFSGPVL TQEVNNTTCT YSPTQKVLEP NFVVGAPSSA RLPEAGSQLN YVVLPDSQTK  540
SSSMGKRFVK ILDSISAPPA FAAAEYPASL CKSLAPISGA HHNTIRMSAE VISIGSLTPA  600
SRDKWSLEKD EGMELLFSAG FEPDTRVHCG CNTITAVLRG GFCLFFFSAI MLLVSYEVGM  660
CIYGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-48181769168Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00343DAPTransfer from AT3G10500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G30590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0996290.0AK099629.1 Oryza sativa Japonica Group cDNA clone:J013057D07, full insert sequence.
GenBankAK1207730.0AK120773.1 Oryza sativa Japonica Group cDNA clone:J023008J18, full insert sequence.
GenBankKF2802620.0KF280262.1 Oryza sativa Japonica Group NAC transcription factor (NAC40) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660391.10.0PREDICTED: uncharacterized protein LOC102710047
TrEMBLJ3MVC80.0J3MVC8_ORYBR; Uncharacterized protein
STRINGOB08G30590.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP71073650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.19e-75NAC domain containing protein 53