PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G30010.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 820aa    MW: 88830.2 Da    PI: 9.6806
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G30010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72.1e-057395123
                  EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                  ++C+ C+k F r  nL+ H r H
  OB08G30010.1 73 FVCEVCNKGFQREQNLQLHRRGH 95
                  89*******************88 PP
2zf-C2H212.50.00043149171123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   +kC +C+k++  +s+ k H +t+
  OB08G30010.1 149 WKCDKCNKRYAVQSDWKAHSKTC 171
                   58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-57295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.92E-77295No hitNo description
SMARTSM003550.00417395IPR015880Zinc finger, C2H2-like
PfamPF121715.6E-57395IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015711.0947395IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.5E-5137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.92E-7144169No hitNo description
SMARTSM00355110149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    Send to blast
MAAASAHYFG LSEPAQMQQQ QQQQQAHLQS NAAAPPAAAT PPPKKKRNQP GNPNPDAEVI  60
ALSPHTLLAT NRFVCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNPKETR RRVYLCPEPS  120
CVHHDPSRAL GDLTGIKKHY CRKHGEKKWK CDKCNKRYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AQESGRMPPM AGTALYGAGS LAAIGLAGMA APQLQSFQDQ  240
TPHSSAITGG NAATQFDHLM APSSAASPAF XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  420
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  480
XXXXXXXXXR ARGSGRRPPM AGTALYGAGS LAAIGLAGMA APQLQSFQDQ TPHSSAITGG  540
NAATQFDHLM APSSAASPAF RATQPASSAS SPFYLGRGAD DGQTHTSLLH GKPGFHGLMQ  600
LPEQHQPAGN NGLLNLSYFS GANGGGHQDA RLIYPEQFNG AGAGNGRPGS GGQHGNSGAN  660
TDSASIFSGN MMGGGFSSLY SSSDQSVAPP QMSATALLQK AAQMGATTSS GGGAGSVNTL  720
LKGLGSGGAL NGKAAGFIMS GESSSRSTSQ TAENESQLRD LMMNAGTVFV GGGFPGVDDG  780
KLSTRDFLGM NGGAAGLALR HSTAGMGMGS LDQEMKWINW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-34145211369Zinc finger protein JACKDAW
5b3h_F5e-34145211369Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G30010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0721280.0AK072128.1 Oryza sativa Japonica Group cDNA clone:J013124C13, full insert sequence.
GenBankAK0998300.0AK099830.1 Oryza sativa Japonica Group cDNA clone:J013105K20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695695.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like, partial
TrEMBLJ3MV700.0J3MV70_ORYBR; Uncharacterized protein
STRINGOB08G30010.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-106C2H2-like zinc finger protein