PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G29340.1
Common NameLOC102710519
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 371aa    MW: 39762.5 Da    PI: 4.9292
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G29340.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.52.8e-35411322102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+++g++fvv+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F++g+++ll++i+
  OB08G29340.1  41 FLTKTYQLVDDPAVDDVISWNDDGSTFVVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANDCFRRGERRLLCEIH 128
                   9*****************************************************************99.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
  OB08G29340.1 129 RRKV 132
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3830125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.5E-5937130IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.05E-3538130IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.5E-204164IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.9E-3241130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-207991IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434080104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-2092104IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MAEKGAAAVA AAAAPGEPSP SPPPPAPAAE AGQQRSVPTP FLTKTYQLVD DPAVDDVISW  60
NDDGSTFVVW RPAEFARDLL PKYFKHNNFS SFVRQLNTYG FRKIVPDRWE FANDCFRRGE  120
RRLLCEIHRR KVTPPAPAAT TGAVTVAATI PMALPVTRDG SPVLSGEEQV ISSSSSPEPP  180
FLLPQAPSGS GSGCVASGDM GEENDRLRRE NAQLARELSQ MKKLCNNILL LMSKYASTQQ  240
LDAANAAGGN CSGESAEAAA TPLPPPAVLD LMPSCAAALA VAATPAPDTD EEAMSAKLFG  300
VSIGRKRMRR DGDDRAAEVK AEPMDGRPHA KEDDHSAETQ VWPIYRPRPV YQPIRACNGY  360
DYDDQDGSNS S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A4e-264113310112Heat shock factor protein 1
5hdn_A4e-264113310112Heat shock factor protein 1
5hdn_B4e-264113310112Heat shock factor protein 1
5hdn_C4e-264113310112Heat shock factor protein 1
5hdn_D4e-264113310112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G29340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1017000.0AK101700.1 Oryza sativa Japonica Group cDNA clone:J033060E19, full insert sequence.
GenBankAY3444840.0AY344484.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF2 mRNA, complete cds.
GenBankCU4063540.0CU406354.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C108F04, full insert sequence.
GenBankCU4068840.0CU406884.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C109L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659656.10.0PREDICTED: heat stress transcription factor B-2b-like
SwissprotQ6Z9C80.0HFB2B_ORYSJ; Heat stress transcription factor B-2b
TrEMBLJ3MV030.0J3MV03_ORYBR; Uncharacterized protein
STRINGOB08G29340.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.16e-72heat shock transcription factor B2A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xiang J, et al.
    Heat shock factor OsHsfB2b negatively regulates drought and salt tolerance in rice.
    Plant Cell Rep., 2013. 32(11): p. 1795-806
    [PMID:23949687]