PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G28540.1 | ||||||||
Common Name | LOC102704726 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 224aa MW: 24082.4 Da PI: 8.9715 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 102.8 | 4.4e-32 | 17 | 153 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...tk.sgyWk.atgkdke 91 lppGfrFhPtdeelvv+yL++k+ g +l++ vi+++ +++k++Pwd+p a++ e yfF+ r ++ g+ ++r+ t+ g Wk a g+dk+ OB08G28540.1 17 LPPGFRFHPTDEELVVQYLRRKAFGLPLPA-AVITDLhNLHKLDPWDIP---GASDGEKYFFAVRPAMASGGRCSRRQmqaTAsGGCWKpAGGRDKP 109 79****************************.8899988***********...3467899******9999876655554233334889**66678*** PP NAM 92 vlsk...kgelvglkktLvfy..kgrapkge..ktdWvmheyrl 128 v+++ +++lvg+kk +vf +g+ap + ++ Wvmhey+l OB08G28540.1 110 VVASrcgGSHLVGVKKAMVFVprQGKAPAAAagSCCWVMHEYSL 153 *9998988999**********987777765544899******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-40 | 12 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 41.616 | 17 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.4E-21 | 18 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MERGAAPVLV RHGGVELPPG FRFHPTDEEL VVQYLRRKAF GLPLPAAVIT DLHNLHKLDP 60 WDIPGASDGE KYFFAVRPAM ASGGRCSRRQ MQATASGGCW KPAGGRDKPV VASRCGGSHL 120 VGVKKAMVFV PRQGKAPAAA AGSCCWVMHE YSLALPMHNK GCLAEAEEWV VCRIFQRSSR 180 SPRRPVDHDV SRRTTPPSQS AASSSSSSSC VTSSSDQEEE VSSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-29 | 15 | 179 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-29 | 15 | 179 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-29 | 15 | 179 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-29 | 15 | 179 | 15 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-29 | 15 | 179 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-29 | 15 | 179 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-29 | 15 | 179 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-29 | 15 | 179 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-29 | 15 | 179 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-29 | 15 | 179 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-29 | 15 | 179 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-29 | 15 | 179 | 18 | 170 | NAC domain-containing protein 19 |
4dul_A | 1e-29 | 15 | 179 | 15 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-29 | 15 | 179 | 15 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G28540.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT841566 | 1e-168 | CT841566.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C104M04, full insert sequence. | |||
GenBank | KJ690249 | 1e-168 | KJ690249.1 Oryza rufipogon NAC transcription factor 4 (NAC4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659635.1 | 1e-164 | PREDICTED: NAC domain-containing protein 83-like | ||||
TrEMBL | J3MUS3 | 1e-163 | J3MUS3_ORYBR; Uncharacterized protein | ||||
STRING | OB08G28540.1 | 1e-164 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 1e-41 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Entrez Gene | 102704726 |