PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G27580.1
Common NameLOC102719607
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1111aa    MW: 123392 Da    PI: 6.6765
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G27580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.7e-22130231199
                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                   f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +dg  ++
  OB08G27580.1 130 FCKTLTASDTSTHGGFSVPRRAAERIfprldfsM-QPPA-QELQARDLHDNAWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDG--RQ 222
                   99*****************************954.4444.49************************************************666..55 PP

                   ..EEEEE-S CS
            B3  91 elvvkvfrk 99 
                   +l+++++r+
  OB08G27580.1 223 QLLLGIRRA 231
                   569999997 PP
2Auxin_resp118.26.9e-39256339183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaa+++s F+++YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+ S+Wr+L+
  OB08G27580.1 256 AAHAAANNSQFTIYYNPRASPSEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKTSHWRNLQ 339
                   79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.68E-42120259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-39123245IPR015300DNA-binding pseudobarrel domain
CDDcd100177.87E-19129221No hitNo description
PfamPF023621.1E-20130231IPR003340B3 DNA binding domain
SMARTSM010194.4E-20130232IPR003340B3 DNA binding domain
PROSITE profilePS5086311.928130232IPR003340B3 DNA binding domain
PfamPF065071.2E-33256339IPR010525Auxin response factor
PfamPF023095.6E-109811078IPR033389AUX/IAA domain
PROSITE profilePS5174526.6389931077IPR000270PB1 domain
SuperFamilySSF542777.46E-710051072No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1111 aa     Download sequence    Send to blast
MAAPAASSGA EEGEGRGARV NQELWYACAG PLVSLPPQGS LVVYFPQGHS EQVAASMRRD  60
ADAQIPSYPN LPSKLICILH SVTMHADPDT DEVYAQMTLQ PVSNVSQCDK ETLLASELAL  120
KQTRPQTEFF CKTLTASDTS THGGFSVPRR AAERIFPRLD FSMQPPAQEL QARDLHDNAW  180
TFRHIYRGQP KRHLLTTGWS LFVSGKRLLA GDSVLFIRDG RQQLLLGIRR ANRQPTNLSS  240
SVLSSDSMHI GVLAAAAHAA ANNSQFTIYY NPRASPSEFV IPFAKYQKAV YGNQLSLGMR  300
FRMMFETEES GTRRYMGTIT GISDLDPVRW KTSHWRNLQV AWDEAAPSER RTRVSLWEVE  360
PVIAPFFIYP SPLFTAKRPR LPGMADEGTE MDSVIKRTMP WLGEEICKKD LNIQNNAVTG  420
LNLAQWMNMQ NNSLPGSVVQ PELLSPLSGK PVQNLAATDL SRQISFHTQF LQQNNIQFNT  480
ALVPQQNQQT EQLAKAIATP NQLVSVIIPQ KVVQDCNSEQ RQHVVTQTVQ GNQPNINIPQ  540
PQLVVQAQLQ QPQVILQAQL QQPQVVVQAQ LQQTQPLVQS HAVLQGGLQQ IQLLQQQQSH  600
VQHQQVTQQL QQQQTQQLQP VQQVQHSVQD QQIKMQPVHV SADANINKQI ADHQMKLQLL  660
KALQPQQPLI SEQQKMLLDL QQQMISSQSA PQQCVQVTTQ ATSLHNSDNA LYPTQHKVQS  720
HQQVQDLTGN VIPNAKPDIV TSLGASSLHA AGGLQLLKTD DVSSSSTSPS TNSNHVLLQP  780
IQSSSKNQSL TTAGKTSQSS VVLGPTIEQD RKPYQNVEQT MMIPKMTEQR PTTGQDCIKN  840
NPQMDYLDTS SSATSVCLSQ ADGSLQQNFQ PLSFNPHPLL KDTVPDSVFE VTDPRNNLLF  900
GVNIDGQLGL PLNADLLAND IETDKYMDQL PGNGISNYIS SKDSQQELSS SMISHSFGVA  960
DMAFNSIDSA INETPFLNRN SQATAGPAHQ RMRTYTKVHK RGAVGRSIDI NRYSGYDELK  1020
HDVARMFGIE GQLGDQNRVG WKLVYEDHEK DVLLVGDDPW DDFVKCVRCI RILSPQEEMQ  1080
MRLVGDFGDR FLTNQACSSS DGGHPWRITG D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651636047388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G27580.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0712970.0AB071297.1 Oryza sativa OsARF7b mRNA for auxin response factor 7b, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659604.20.0PREDICTED: auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLJ3MUH70.0J3MUH7_ORYBR; Auxin response factor
STRINGOB08G27580.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]