PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G27000.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 336aa    MW: 36529.5 Da    PI: 6.9047
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G27000.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.93.4e-52241511128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 
                   lppGfrFhPtdeelv++yL+ kv +  +     i+evd++++ePw+Lp++++ +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+evl++ +
  OB08G27000.1  24 LPPGFRFHPTDEELVTFYLASKVFNGACCG-VDIAEVDLNRCEPWELPESARMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREVLNAaT 119
                   79************************9777.34***************9888999**************************************9878 PP

           NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                   g+l g+kktLvfykgrap+gekt+Wv+heyrl
  OB08G27000.1 120 GALLGMKKTLVFYKGRAPRGEKTKWVLHEYRL 151
                   899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-6116183IPR003441NAC domain
PROSITE profilePS5100558.28824183IPR003441NAC domain
PfamPF023653.7E-2725151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010014Biological Processmeristem initiation
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGDALWDILG EEMAAAAAAG EHGLPPGFRF HPTDEELVTF YLASKVFNGA CCGVDIAEVD  60
LNRCEPWELP ESARMGEREW YFFSLRDRKY PTGLRTNRAT GAGYWKATGK DREVLNAATG  120
ALLGMKKTLV FYKGRAPRGE KTKWVLHEYR LDGDFAAARR STKAYVAADI MQEEWVICRI  180
FHKVGDQYSK LMMMKSPASY YLPVSHHPSS IFHDLPPVPF PNPSGCASLV PFHHDLPPLQ  240
HGQAAAKNSI GGGFNGGFVF PAPEPTTTTT TTMAAPAAAF PSFASATVAG KEGPPPQLGV  300
NAGQQEPPAP PTWMDAYLQH SGFLYEIGPP AVTRGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-50181869171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for axillary meristem initiation and separation of the meristem from the main stem. May act as an inhibitor of cell division. {ECO:0000269|PubMed:12837947, ECO:0000269|PubMed:17122068}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00241DAPTransfer from AT1G76420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G27000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By BRM, at the chromatin level, and conferring a very specific spatial expression pattern. {ECO:0000269|PubMed:16854978}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0612700.0BT061270.1 Zea mays full-length cDNA clone ZM_BFb0128J16 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659576.10.0PREDICTED: protein CUP-SHAPED COTYLEDON 3
SwissprotQ9S8518e-86NAC31_ARATH; Protein CUP-SHAPED COTYLEDON 3
TrEMBLJ3MUB90.0J3MUB9_ORYBR; Uncharacterized protein
STRINGOB08G27000.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112373341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76420.11e-86NAC family protein
Publications ? help Back to Top
  1. Chen C, et al.
    Transcriptome profiling reveals roles of meristem regulators and polarity genes during fruit trichome development in cucumber (Cucumis sativus L.).
    J. Exp. Bot., 2014. 65(17): p. 4943-58
    [PMID:24962999]
  2. Gonçalves B, et al.
    A conserved role for CUP-SHAPED COTYLEDON genes during ovule development.
    Plant J., 2015. 83(4): p. 732-42
    [PMID:26119568]
  3. Balkunde R,Kitagawa M,Xu XM,Wang J,Jackson D
    SHOOT MERISTEMLESS trafficking controls axillary meristem formation, meristem size and organ boundaries in Arabidopsis.
    Plant J., 2017. 90(3): p. 435-446
    [PMID:28161901]
  4. Espinosa-Ruiz A, et al.
    TOPLESS mediates brassinosteroid control of shoot boundaries and root meristem development in Arabidopsis thaliana.
    Development, 2017. 144(9): p. 1619-1628
    [PMID:28320734]
  5. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]