PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G25840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 109aa MW: 12229.7 Da PI: 10.9711 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37.1 | 7.1e-12 | 1 | 51 | 10 | 60 |
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 10 kqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 + +NRe+ArrsR RK+ ++ eL v+ L + N++L +el++ +a ++ OB08G25840.1 1 MVSNRESARRSRMRKQRQLSELWAQVEHLRGANRRLLDELNRALRGCADVR 51 579*************************************99877777665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00170 | 1.1E-8 | 1 | 47 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.29E-9 | 1 | 44 | No hit | No description |
CDD | cd14702 | 7.94E-10 | 1 | 45 | No hit | No description |
PROSITE profile | PS50217 | 8.737 | 1 | 57 | IPR004827 | Basic-leucine zipper domain |
SMART | SM00338 | 7.5E-4 | 3 | 56 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.2E-7 | 3 | 46 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MVSNRESARR SRMRKQRQLS ELWAQVEHLR GANRRLLDEL NRALRGCADV RRESSRLRDE 60 KAELIKKLQL LPQPAPEKNA SSPSASSNHG SSCSSEPCKN STTTTTAAE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 15 | RRSRMRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G25840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004376 | 2e-94 | AP004376.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0481F05. | |||
GenBank | AP004557 | 2e-94 | AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08. | |||
GenBank | AP014964 | 2e-94 | AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012616 | 2e-94 | CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence. | |||
GenBank | CT831504 | 2e-94 | CT831504.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115A07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015695647.1 | 9e-72 | PREDICTED: basic leucine zipper 63 | ||||
Swissprot | Q9FMC2 | 5e-14 | BZP43_ARATH; Basic leucine zipper 43 | ||||
TrEMBL | J3MU03 | 4e-71 | J3MU03_ORYBR; Uncharacterized protein | ||||
STRING | OB08G25840.1 | 6e-72 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1186 | 35 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30530.1 | 2e-17 | basic leucine-zipper 42 |
Publications ? help Back to Top | |||
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