PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB08G25340.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ZF-HD

Protein Properties

Length: 305aa MW: 32014.5 Da PI: 9.3128

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB08G25340.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102.4	3e-32	64	117	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +rY+eClkNhA+ +GghavDGCgEfm++ geeg+++al+CaACgCHRnFHR+e++ OB08G25340.1 64 ARYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSIDALRCAACGCHRNFHRKESD 117 79***********************9.999******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	5.2E-29	64	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	8.8E-30	65	115	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-25	65	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.963	66	115	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MDFDEHDEGD GDEEMPPMPL SSGYEAPMQP GLGGGGVPKP GDSGGRFGTT PGGGGGGGGG 60 GGGARYRECL KNHAVGIGGH AVDGCGEFMA AGEEGSIDAL RCAACGCHRN FHRKESDSPT 120 GVGPAEPSAV SPAAISAYGA SPHHQFSPYY RTPAGYLHHQ QQQMAAAAPD GRGGRRRRSG 180 LPAAPSRASL HLPLWTRRGR RHVRDGRAHG DWPHGRHVPR LGWPVRLRQE AVPHQVHAGA 240 EGQDARLRGA ARVAHPEARR GRRAAVLRGG LRQAPRPQGV DAQQQAHPGE EAIAKQSSLE 300 LISRC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB08G25340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109528	0.0	AK109528.1 Oryza sativa Japonica Group cDNA clone:002-116-C04, full insert sequence.
GenBank	AP004643	0.0	AP004643.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OJ1113_A10.
GenBank	AP014964	0.0	AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015695882.1	6e-92	PREDICTED: zinc-finger homeodomain protein 2
TrEMBL	J3MTV3	0.0	J3MTV3_ORYBR; Uncharacterized protein
STRING	OB08G25340.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	1e-27	homeobox protein 22