PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G24950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 211aa MW: 22475.5 Da PI: 10.0086 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 52.2 | 1.3e-16 | 125 | 179 | 5 | 59 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L+++N++L+k+ ee+ ++ ++l OB08G24950.1 125 RRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQKKQEEMMEMQKNL 179 79*********************************************99998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.0E-14 | 121 | 185 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.197 | 123 | 174 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 7.32E-26 | 125 | 177 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.4E-15 | 125 | 178 | No hit | No description |
SuperFamily | SSF57959 | 6.88E-12 | 125 | 179 | No hit | No description |
Pfam | PF00170 | 2.4E-14 | 125 | 179 | IPR004827 | Basic-leucine zipper domain |
PROSITE pattern | PS00036 | 0 | 128 | 143 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:1903648 | Biological Process | positive regulation of chlorophyll catabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MDLKDGGGSE RRGAAGAGVG AAVNNSSIFF GNFGGANDAA GAGVMGFSPV GIGDPTMGNG 60 LMSGAAGMGG GGITVASVDT SVGPMDSVGR GDGDLSSPMA PVPYPFEGVI RGRRSGGIEE 120 KVVERRQRRM IKNRESAARS RARKQAYTME LEAEVQKLKE QNMELQKKQE EMMEMQKNLF 180 PEMQKNQVSE VVNNPYGQKK RCLRRTLTGP W |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters. {ECO:0000269|PubMed:10611387}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G24950.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA). {ECO:0000269|PubMed:10611387}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB023288 | 0.0 | AB023288.1 Oryza sativa Japonica Group mRNA for TRAB1, complete cds. | |||
GenBank | AY323482 | 0.0 | AY323482.1 Oryza sativa (japonica cultivar-group) bZIP transcription factor (aba1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659491.2 | 1e-137 | PREDICTED: bZIP transcription factor TRAB1-like, partial | ||||
Swissprot | Q6ZDF3 | 1e-109 | TRAB1_ORYSJ; bZIP transcription factor TRAB1 | ||||
TrEMBL | J3MTR4 | 1e-150 | J3MTR4_ORYBR; Uncharacterized protein | ||||
STRING | OB08G24950.1 | 1e-151 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP706 | 38 | 147 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G45249.1 | 4e-31 | abscisic acid responsive elements-binding factor 2 |
Publications ? help Back to Top | |||
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