PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G23190.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 207aa    MW: 22590.2 Da    PI: 8.2952
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G23190.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM143.51.2e-44131521127
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..........kvka...eekewyfFskrdkkyat.gkrknratksgyW 83 
                   lp+GfrF Ptdeelv +yL++k+ +  +++  +i++vd+y ++PwdLp+          +  +   + + +yfF+ r++k++t g r +rat+ gyW
  OB08G23190.1  13 LPAGFRFFPTDEELVGYYLARKAMDAAFTC-AAIRDVDLYASDPWDLPSnssaastgggE--GgggGGECCYFFCMRSSKHPTsGARVRRATAGGYW 106
                   799*************************99.88**************9546666554441..133244456*********9976999********** PP

           NAM  84 katgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyr 127
                   k+tgkdk v++   +g+lvg+kktLvfy grap+g+kt+Wvmhey+
  OB08G23190.1 107 KSTGKDKGVYAGngSGQLVGTKKTLVFYGGRAPRGHKTSWVMHEYS 152
                   **********98777889***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-462158IPR003441NAC domain
PROSITE profilePS5100545.28913174IPR003441NAC domain
PfamPF023651.5E-2514152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MNMISIMAEE QRLPAGFRFF PTDEELVGYY LARKAMDAAF TCAAIRDVDL YASDPWDLPS  60
NSSAASTGGG EGGGGGGECC YFFCMRSSKH PTSGARVRRA TAGGYWKSTG KDKGVYAGNG  120
SGQLVGTKKT LVFYGGRAPR GHKTSWVMHE YSRAPGGNLP RRAQAHDLPE LVEFGDIYGG  180
RMDYQQQQAS PSNSVGSFLD ERYFWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-351015112138Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G23190.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046662e-64AP004666.4 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0431A03.
GenBankAP0149642e-64AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695611.11e-102PREDICTED: NAC transcription factor 29
SwissprotQ9FLJ22e-45NC100_ARATH; NAC domain-containing protein 100
TrEMBLJ3MT891e-153J3MT89_ORYBR; Uncharacterized protein
STRINGOB08G23190.11e-153(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP147652122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.15e-47NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]