PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G20490.1 | ||||||||
Common Name | LOC102723076 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | bZIP | ||||||||
Protein Properties | Length: 182aa MW: 20122.4 Da PI: 9.8305 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 53.5 | 5.1e-17 | 32 | 92 | 3 | 63 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 elkr rrk++NRe+A+rsR+RK++ ++ L v +L+aeN++L +l++ ++ +a+ ++++ OB08G20490.1 32 ELKRKRRKESNRESAKRSRLRKQQHLDDLNSQVNQLKAENQQLGATLSMVTQSYAAAEAQN 92 89**************************************************999887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.5E-13 | 26 | 84 | No hit | No description |
SMART | SM00338 | 4.1E-18 | 30 | 94 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.1E-13 | 31 | 86 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.484 | 32 | 95 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.19E-12 | 33 | 86 | No hit | No description |
CDD | cd14702 | 8.07E-20 | 35 | 86 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 37 | 52 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MTLSGGATSG SSGGTHRGSW SEGDIQLQAQ MELKRKRRKE SNRESAKRSR LRKQQHLDDL 60 NSQVNQLKAE NQQLGATLSM VTQSYAAAEA QNSVLRTQRT ELDSRLRALR EIVFYLNTPT 120 QLLPAAYPST TMTAAAAAAA SGHYYDYYDA ASANPWSSSG MQMMQQQQQP MDQFLLPVLG 180 SF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 38 | KRKRRK |
2 | 34 | 39 | RKRRKE |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00239 | DAP | Transfer from AT1G75390 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G20490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006660081.1 | 1e-131 | PREDICTED: ocs element-binding factor 1-like | ||||
TrEMBL | J3MSH0 | 1e-130 | J3MSH0_ORYBR; Uncharacterized protein | ||||
STRING | OB08G20490.1 | 1e-131 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3740 | 32 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75390.1 | 3e-16 | basic leucine-zipper 44 |
Link Out ? help Back to Top | |
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Entrez Gene | 102723076 |