PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB08G13850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C3H | ||||||||
Protein Properties | Length: 270aa MW: 28952.3 Da PI: 7.9261 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.5 | 2.9e-10 | 3 | 28 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f++ GtC+y +C+FaHg+ OB08G13850.1 3 FKTKLCCKFRA-GTCPYVTNCNFAHGM 28 69*********.*************95 PP | |||||||
2 | zf-CCCH | 18.5 | 3.6e-06 | 76 | 101 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd C+F H+ OB08G13850.1 76 YKGRHCKKFYTDEGCPYGDACTFLHD 101 77888********************7 PP | |||||||
3 | zf-CCCH | 43.9 | 3.9e-14 | 149 | 174 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg OB08G13850.1 149 WKTRICNKWEMTGYCPFGSKCHFAHG 174 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.028 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.7E-14 | 2 | 35 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0014 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.38E-7 | 2 | 33 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-7 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.4E-9 | 75 | 103 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-7 | 75 | 103 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.43 | 75 | 102 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.629 | 75 | 103 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-17 | 144 | 178 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.53E-10 | 145 | 179 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.422 | 148 | 176 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-9 | 148 | 175 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-11 | 149 | 174 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MFFKTKLCCK FRAGTCPYVT NCNFAHGMEE LRKPPPNWQE IVAAHEEATE AREEHQIPIM 60 TSSGPAPGDA GSGRAYKGRH CKKFYTDEGC PYGDACTFLH DEQSKARESV AISLSPTVGA 120 AGGYNSASAA TAAASSAAAN GPAQKPSNWK TRICNKWEMT GYCPFGSKCH FAHGAAELHK 180 YGGGLVDLDS RDAASTPDSK QAAASAKAPT DTAIASTAAP PHADVYHLGV QAQRSTIVNQ 240 RSGQVQRPIQ KWKGPDKISR IYGDWIDETE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB08G13850.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP098377 | 1e-119 | FP098377.1 Phyllostachys edulis cDNA clone: bphyem211c22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006659856.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 56 | ||||
Swissprot | Q84UQ3 | 1e-163 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | J3MQK6 | 0.0 | J3MQK6_ORYBR; Uncharacterized protein | ||||
STRING | OB08G13850.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6615 | 38 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-86 | C3H family protein |