PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G13730.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 699aa    MW: 77644 Da    PI: 4.2985
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G13730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.1e-5291421128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                   lp GfrFhPtdeelv +yLk k++g+   ++evi+e+d++k+ePwdLp k  +++++ ew+fF+++d+ky++g+r+nrat++gyWkatgkd+ + sk
  OB08G13730.1   9 LPLGFRFHPTDEELVRHYLKGKITGQIRAEAEVIPEIDVCKCEPWDLPdKsLIRSDDPEWFFFAPKDRKYPNGSRSNRATEAGYWKATGKDRVIRSK 105
                   699***********************988889***************96446677888**************************************9 PP

           NAM  96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k++++g+kktLvf++grapkge+t W+mheyr 
  OB08G13730.1 106 gdkkKQQVIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                   88777777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-593163IPR003441NAC domain
PROSITE profilePS5100557.6589163IPR003441NAC domain
PfamPF023651.4E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MTVMELKKLP LGFRFHPTDE ELVRHYLKGK ITGQIRAEAE VIPEIDVCKC EPWDLPDKSL  60
IRSDDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIRSKGDKKK QQVIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FRKQEEKIER PSPDEMDRSG  180
YSPTPSRSTP DNIEPNEEGN TPLNKESPES PIDLPALAET PAAPITRWLA DRTDNVMRNE  240
ANISHMPLHG LDEEIKQASP SVGALVHPNC SQQSIHHNDE LTTVSAPPMP QPEDFCNFPL  300
GSLGNFDGNM TPQDTLDEFL NRTLADPDEH SSTTSKAQYD SDTGILPIDF ENPGLMQGEL  360
MDDLSGLENL NFWPEDPPPQ MSALYEDTPL LPYDTTDQDV LSMDSGAESL QDLFNSMDDS  420
NVRNNVWINE PDLSGTGFPM YWPSQSNDLF AKQGTANRRL KLQESLCPDF ECEDEESGIV  480
VTSKYANEAT GESTAEKDMP SDGDDAESTG ITILRRRNVT AAILPSDEED TESTGITILR  540
RRQTPTASSG GSFTQEGAAV RRVRLQSDFN AAPCSSVDAS SSCIIDESGS ECTMEKAEIE  600
ENAGTTLAED DELSGICHED EKEMPAHDAS VAVAEAESVL RLRKTAEGSD KENKQDDGAL  660
DSHVRAPPVN KREFPAYIIW LVLSVALVLL ISVGVYGWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-45916420169NAC domain-containing protein 19
3swm_B4e-45916420169NAC domain-containing protein 19
3swm_C4e-45916420169NAC domain-containing protein 19
3swm_D4e-45916420169NAC domain-containing protein 19
3swp_A4e-45916420169NAC domain-containing protein 19
3swp_B4e-45916420169NAC domain-containing protein 19
3swp_C4e-45916420169NAC domain-containing protein 19
3swp_D4e-45916420169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G13730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659850.10.0PREDICTED: uncharacterized protein LOC102700454 isoform X1
TrEMBLJ3MQJ40.0J3MQJ4_ORYBR; Uncharacterized protein
STRINGOB08G13730.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-68NAC transcription factor-like 9