PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G12430.1
Common NameLOC102705933
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 920aa    MW: 101347 Da    PI: 9.3053
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G12430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06289308626
                   -SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                   C++f + G C++G++C+++H+
  OB08G12430.1 289 CHDFVK-GRCSRGANCRYIHD 308
                   ******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.21198223IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962202224IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413283310IPR000571Zinc finger, CCCH-type
SMARTSM003560.036283309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4286309IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-4289308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.211342369IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-7343367IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-5343368IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-4346368IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 920 aa     Download sequence    Send to blast
MTGEPRKERS KWDSKGPPDI VEISEDESLP MNMDDHRKGG DSLPNQDFSH GNDNQIGEAD  60
GLNKDIKERP SKASSERLPL RMGDEDHNKN GWHNRGFEKA GRYADDRKRG DGWGTALSRG  120
YSSRMSSGPD VWKQRSRSPL SPRGGWNRSR RNRSRSRSRS RSRSRSIGRG RGTSRSRSPY  180
FTDRGSEWRA ERGRAPGGPA LPCRDFVAGR CRRGSNCRLP HEDGVRRQFD EHYPVDSRER  240
YGHQNREFMD SREQDDYLRS RPSRGGHYDE GTWERPEPPR RDYRSTMQCH DFVKGRCSRG  300
ANCRYIHDDS TSHVGWRDEV RGSAIGRGGP DSSYGSRTEH RRTNKNPCKF FADGRCRRGQ  360
NCPYLHEEAS QSQMGLGAPD EPLGYTGGPT TRGNYSNWSE QNNAVQASSH ILSRDDRENP  420
VPQSTGRSDS RYENKNRHSK DAGSSQYQIF PQEGFGSLEQ NKPETAASQP SQFLPSVQTG  480
AESINIDKVS DMGGQSGPGK VGNLSMQIRM HSANPVGGQN LGEKADIQDA IPQISAALSL  540
PVTTQLQNIA SSVTLNGQQS DFSLHSNRQD QFVVPHATIN NSAPSMQSQP VAPYMGQSQQ  600
GYIMGAQTSQ DLSARNGQIF NVVGQVPQNL PTIVHAGQSQ GTSDTPNPGR DSGDQSLHNT  660
HNFQPVAPNE QTQSQTLQGL SVVASSSLVD MAGAPLSQNA VSSLTASLAQ YFAPSLTADT  720
TGLQSSQPNP NSSLMTNSSA APQAVQPNHW PWLQQAGMIQ PPHLVPSEQP ASQIFQAPMA  780
AGSSNGNPLV LPHSVAPTGP AAVLANEIAP AENKKEEPKD TDAEAHEDGE NKKSKDSKAL  840
KMFKLALADF VKDALKPTWK EGQMSRDIHK TIVKKVVDKV TTTVENTPQT KEKIDIYMSY  900
SREKLNKLVQ AYVGKYVKKD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154164RSRSRSRSRSR
2156164RSRSRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G12430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1004550.0AK100455.1 Oryza sativa Japonica Group cDNA clone:J023091E18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006659097.10.0PREDICTED: zinc finger CCCH domain-containing protein 55-like
SwissprotQ6YYC00.0C3H55_ORYSJ; Zinc finger CCCH domain-containing protein 55
TrEMBLJ3MQ640.0J3MQ64_ORYBR; Uncharacterized protein
STRINGOB08G12430.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77663443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.15e-11C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]