PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB08G11290.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 387aa    MW: 43621.7 Da    PI: 7.8604
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB08G11290.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.32.5e-52111391128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   +ppGfrFhPt+eel+++yL+kkv++++++l +vi++vd++k+ePwd+++  k+ +  +++wyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++
  OB08G11290.1  11 VPPGFRFHPTEEELLNYYLRKKVASEQIDL-DVIRDVDLNKLEPWDIQErcKIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYN 106
                   69****************************.9***************963444443456************************************** PP

           NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + +g++ktLvfykgrap+g+k+dW+mheyrl
  OB08G11290.1 107 -AVHRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 139
                   .8899***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.03E-537145IPR003441NAC domain
PROSITE profilePS5100551.03211154IPR003441NAC domain
PfamPF023656.1E-2812139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSISVNGQSC VPPGFRFHPT EEELLNYYLR KKVASEQIDL DVIRDVDLNK LEPWDIQERC  60
KIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYNAVHR IGMRKTLVFY  120
KGRAPHGQKS DWIMHEYRLD DPDTASAAAT VRHCCCGGGG VRRRPGGWLG GVQGVQEEAP  180
PQGGRERRRR REARRRGXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXVASHLNGQ PDAPDDQLCF DAAADDDDDD ASAADGLAYY SAAATRLLGG TATTIASDDD  360
LWSFTRSAAP PPPPPSTTPE RLSHVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-43814214145NO APICAL MERISTEM PROTEIN
1ut4_B4e-43814214145NO APICAL MERISTEM PROTEIN
1ut7_A4e-43814214145NO APICAL MERISTEM PROTEIN
1ut7_B4e-43814214145NO APICAL MERISTEM PROTEIN
3swm_A5e-43814217148NAC domain-containing protein 19
3swm_B5e-43814217148NAC domain-containing protein 19
3swm_C5e-43814217148NAC domain-containing protein 19
3swm_D5e-43814217148NAC domain-containing protein 19
3swp_A5e-43814217148NAC domain-containing protein 19
3swp_B5e-43814217148NAC domain-containing protein 19
3swp_C5e-43814217148NAC domain-containing protein 19
3swp_D5e-43814217148NAC domain-containing protein 19
4dul_A4e-43814214145NAC domain-containing protein 19
4dul_B4e-43814214145NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185191ERRRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB08G11290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098600.0AK109860.1 Oryza sativa Japonica Group cDNA clone:002-148-G11, full insert sequence.
GenBankJN6340710.0JN634071.1 Oryza sativa Japonica Group secondary wall NAC transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648974.11e-99NAC domain-containing protein 43
RefseqXP_015695478.11e-100PREDICTED: NAC domain-containing protein 43-like
TrEMBLJ3MPV01e-116J3MPV0_ORYBR; Uncharacterized protein
STRINGOB08G11290.11e-117(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.13e-80NAC family protein