PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G32150.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 326aa    MW: 36579.3 Da    PI: 6.3496
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G32150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.35.1e-56121391129
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                   lppGfrFhPtdee+v++yL++k++++++++  vi +v+++++ePwdLp+k+k +ekew+fF+++d+ky+tg r+nrat+sgyWkatgkdke+++ +g
  OB07G32150.1  12 LPPGFRFHPTDEEVVTHYLTRKAQDRRFSC-VVIGDVNLNNCEPWDLPSKAKMGEKEWFFFCHKDRKYPTGMRTNRATASGYWKATGKDKEIFRGRG 107
                   79**************************99.78***************99999******************************************** PP

           NAM  98 elvglkktLvfykgrapkgektdWvmheyrle 129
                    lvg+kktLvfy grap+gekt Wvmheyrle
  OB07G32150.1 108 VLVGMKKTLVFYMGRAPRGEKTPWVMHEYRLE 139
                   ******************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-639170IPR003441NAC domain
PROSITE profilePS5100557.0112170IPR003441NAC domain
PfamPF023654.9E-2913138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MSEVSEEAQL ELPPGFRFHP TDEEVVTHYL TRKAQDRRFS CVVIGDVNLN NCEPWDLPSK  60
AKMGEKEWFF FCHKDRKYPT GMRTNRATAS GYWKATGKDK EIFRGRGVLV GMKKTLVFYM  120
GRAPRGEKTP WVMHEYRLEG KLPPNLPRSA KMDVVACEQD EWAVCRVFNK DLAAKNAQMA  180
PPLDAPPMPR SDSFDILRDF LDDADLPALM DPFADAPTST PPSTAYGYHH AAAVKTEPQH  240
PQPTTHFARP ATTGAGFLHQ PSSADQAIRR FCKAEAAGTS AAGADMSAVA RQQCLDPVDD  300
ELLYYTDSAI PDYSHIWKNS DEMINY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5431706168Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00518DAPTransfer from AT5G18270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G32150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0738760.0AK073876.1 Oryza sativa Japonica Group cDNA clone:J033072L16, full insert sequence.
GenBankAK1056450.0AK105645.1 Oryza sativa Japonica Group cDNA clone:001-200-F06, full insert sequence.
GenBankCT8319100.0CT831910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA022P22, full insert sequence.
GenBankCT8415730.0CT841573.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105A13, full insert sequence.
GenBankCU4055640.0CU405564.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C110F22, full insert sequence.
GenBankJN1854440.0JN185444.1 Oryza sativa Japonica Group NAC transcription factor 15 (NAC15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015694971.10.0PREDICTED: NAC domain-containing protein 92-like
SwissprotQ9FK445e-87NAC87_ARATH; NAC domain-containing protein 87
TrEMBLJ3MP830.0J3MP83_ORYBR; Uncharacterized protein
STRINGOB07G32150.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-84Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]