PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G32110.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 351aa    MW: 38535.6 Da    PI: 7.2101
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G32110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1683.2e-52121391128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                   lppGfrFhPtdeel+ +yL+ +++++++++  +i++vdiyk++PwdLp ++   +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++++ 
  OB07G32110.1  12 LPPGFRFHPTDEELILHYLRSRAAAEQCPV-PIIADVDIYKFDPWDLPpMA-VYGESEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIHDSs 106
                   79****************************.88**************9444.45689*************************************987 PP

           NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                   +g  vg+kk Lvfy+gr pkg+kt+W+mheyrl
  OB07G32110.1 107 TGDSVGVKKALVFYRGRPPKGTKTSWIMHEYRL 139
                   8889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-625184IPR003441NAC domain
PROSITE profilePS5100559.49512184IPR003441NAC domain
PfamPF023654.6E-2713139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MDHQMMSPAT SLPPGFRFHP TDEELILHYL RSRAAAEQCP VPIIADVDIY KFDPWDLPPM  60
AVYGESEWYF FSPRDRKYPN GIRPNRAAGS GYWKATGTDK PIHDSSTGDS VGVKKALVFY  120
RGRPPKGTKT SWIMHEYRLA AADPLSKPPS SSSSSCRFRN VSMRVRIIFH LQLDDWVLCR  180
IYKKSGQASP MVPPLAAEYD HDEPSGVLDD AYSFYAPPSS AVIPKLPKIP SISELFDEHA  240
LAQIFDAADV PADHHNHVNQ NLAVVHPSLN QLLSVGDNFL ADCYSSTTSQ LATAGGKRKS  300
SPGDQWAGHT PAKRLNGSCF DVAPPTVGGL QAAPSSVLGG LNHQMLPPQL F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-6911897173NAC domain-containing protein 19
3swm_B7e-6911897173NAC domain-containing protein 19
3swm_C7e-6911897173NAC domain-containing protein 19
3swm_D7e-6911897173NAC domain-containing protein 19
3swp_A7e-6911897173NAC domain-containing protein 19
3swp_B7e-6911897173NAC domain-containing protein 19
3swp_C7e-6911897173NAC domain-containing protein 19
3swp_D7e-6911897173NAC domain-containing protein 19
3ulx_A7e-691118714171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype. {ECO:0000269|PubMed:20005003}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G32110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8293691e-179CT829369.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA056N06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658973.20.0PREDICTED: NAC domain-containing protein 2-like
SwissprotD2SMN48e-79NAMB1_HORVS; NAC transcription factor NAM-B1
TrEMBLJ3MP790.0J3MP79_ORYBR; Uncharacterized protein
STRINGOB07G32110.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123736123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-78NAC domain containing protein 47
Publications ? help Back to Top
  1. Jamar C, et al.
    NAM-1gene polymorphism and grain protein content in Hordeum.
    J. Plant Physiol., 2010. 167(6): p. 497-501
    [PMID:20005003]