PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB07G29670.1

Common Name

LOC102711993

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 563aa MW: 59929.7 Da PI: 6.5763

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB07G29670.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	43.1	9.1e-14	114	176	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e e +r r+ +NRe+A sRqRKk+++eeLe kvk+++a +L +++ + e a+lk+++ OB07G29670.1 114 EDEARRRARLVRNRESAHLSRQRKKQYVEELEGKVKVMQATIADLTARISCVTAENAALKQQL 176 56789999****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.7E-13	114	178	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.6E-12	115	176	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.174	116	179	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.3E-16	118	177	No hit	No description
SuperFamily	SSF57959	5.75E-13	118	176	No hit	No description
CDD	cd14704	1.21E-14	128	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016021	Cellular Component	integral component of membrane
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 563 aa Download sequence Send to blast
MAETDLLAPP FGDLPFQPAP GDGFPDFPAL GGDDAFAFED FDLEDLDFDF DVDVDLLSPD 60 APPPPPPLAT SSSSAGSPGC GASSSSCKNE ESAESSSRSA VGGSDGGGGK GGKEDEARRR 120 ARLVRNRESA HLSRQRKKQY VEELEGKVKV MQATIADLTA RISCVTAENA ALKQQLSGVA 180 GAGAPPPLPM YPAVYPLPPP WIHPAYAMRG SQVPLVPIPR LKTQRPASTP EPPAKKARKT 240 KKVASVSLLG LLFLMMVGVC LFPAINRMYG GIDVGEGAVF GPSHHGRTLA VEGPQNSVSN 300 GIDQKVTQNG SETLPALLYL PRNGKHVKIN GNLVIKSIVA SEKASSHLSN QGKEETSLAI 360 PGYVAPLEAR EVMDSAKGMR NELMALAPGD RSIYHEDDGM QPQWFSEAMS GPMLNSGMCT 420 EVFQFDLSPT PAHANGIVPV YSGSMTNSSQ NCTENLPSGH VPKVKNRRIL YSEAIPLQGS 480 TANETDHFKA PPKNQSQSHA SRKPASSVVV SVLADPREAS DRDSEGRMSS NSLSRIFVVV 540 LIDSVKYVTY SCVLPFKSHS PHL

Sequence ? help Back to Top

Protein Sequence Length: 563 aa Download sequence Send to blast

MAETDLLAPP FGDLPFQPAP GDGFPDFPAL GGDDAFAFED FDLEDLDFDF DVDVDLLSPD  60
APPPPPPLAT SSSSAGSPGC GASSSSCKNE ESAESSSRSA VGGSDGGGGK GGKEDEARRR  120
ARLVRNRESA HLSRQRKKQY VEELEGKVKV MQATIADLTA RISCVTAENA ALKQQLSGVA  180
GAGAPPPLPM YPAVYPLPPP WIHPAYAMRG SQVPLVPIPR LKTQRPASTP EPPAKKARKT  240
KKVASVSLLG LLFLMMVGVC LFPAINRMYG GIDVGEGAVF GPSHHGRTLA VEGPQNSVSN  300
GIDQKVTQNG SETLPALLYL PRNGKHVKIN GNLVIKSIVA SEKASSHLSN QGKEETSLAI  360
PGYVAPLEAR EVMDSAKGMR NELMALAPGD RSIYHEDDGM QPQWFSEAMS GPMLNSGMCT  420
EVFQFDLSPT PAHANGIVPV YSGSMTNSSQ NCTENLPSGH VPKVKNRRIL YSEAIPLQGS  480
TANETDHFKA PPKNQSQSHA SRKPASSVVV SVLADPREAS DRDSEGRMSS NSLSRIFVVV  540
LIDSVKYVTY SCVLPFKSHS PHL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response. Acts as ER stress sensor and activates the transcription factor BZIP50 and the chaperone BIP1. {ECO:0000269\|PubMed:22050533}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB07G29670.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol- and tunicamycin-induced endoplasmic reticulum (ER) stress response. {ECO:0000305\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK121898	0.0	AK121898.1 Oryza sativa Japonica Group cDNA clone:J033105F09, full insert sequence.
GenBank	AP003765	0.0	AP003765.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1003_C06.
GenBank	AP003832	0.0	AP003832.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1458_B07.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006658038.1	0.0	PREDICTED: bZIP transcription factor 17-like
Swissprot	Q8LIB3	0.0	BZP60_ORYSJ; bZIP transcription factor 60
TrEMBL	J3MNI5	0.0	J3MNI5_ORYBR; Uncharacterized protein
STRING	OB07G29670.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11179	30	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40950.1	3e-72	bZIP family protein

Link Out ? help Back to Top
Entrez Gene	102711993

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Oono Y, et al. Analysis of ER stress in developing rice endosperm accumulating beta-amyloid peptide. Plant Biotechnol. J., 2010. 8(6): p. 691-718 [PMID:20331531] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048] Takahashi H,Kawakatsu T,Wakasa Y,Hayashi S,Takaiwa F A rice transmembrane bZIP transcription factor, OsbZIP39, regulates the endoplasmic reticulum stress response. Plant Cell Physiol., 2012. 53(1): p. 144-53 [PMID:22084314] Ohta M, et al. Analysis of rice ER-resident J-proteins reveals diversity and functional differentiation of the ER-resident Hsp70 system in plants. J. Exp. Bot., 2013. 64(18): p. 5429-41 [PMID:24153418] Cheng Q, et al. An alternatively spliced heat shock transcription factor, OsHSFA2dI, functions in the heat stress-induced unfolded protein response in rice. Plant Biol (Stuttg), 2015. 17(2): p. 419-29 [PMID:25255693]