PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G26230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 171aa MW: 18627.6 Da PI: 9.9367 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00041 | 93 | 115 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ F+++ L H r+H OB07G26230.1 93 HRCSICPLAFTSRQALGGHKRVH 115 79*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.2E-9 | 47 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.099 | 47 | 69 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.91E-8 | 47 | 115 | No hit | No description |
SMART | SM00355 | 0.073 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.0E-4 | 91 | 117 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.2E-6 | 93 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.951 | 93 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.02 | 93 | 115 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 95 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
MEEYLATSLL MLAHGVRNKV NDTSGLGHVQ DMGSTPVAVE KPSQQEYKCS VCGKVYMCYQ 60 ALGGHMTRHR KLLAQVVTDH KLFSNGSEAT KMHRCSICPL AFTSRQALGG HKRVHYGGGV 120 AKDFVKEKNV VKTKSMGEPK AVLKDFDLNL PAVATTVGDK AKNSPPEAKR V |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G26230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006658754.1 | 1e-125 | PREDICTED: zinc finger protein ZAT6-like | ||||
TrEMBL | J3MMJ1 | 1e-124 | J3MMJ1_ORYBR; Uncharacterized protein | ||||
STRING | OB07G26230.1 | 1e-125 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 3e-24 | salt tolerance zinc finger |