PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB07G25050.1

Common Name

LOC102709475

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 292aa MW: 32189.2 Da PI: 8.3828

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB07G25050.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.4e-06	264	286	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ +L+ H + H OB07G25050.1 264 VCPKCSKAFRDPVLLVEHVERdH 286 7*****************99888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF118310	3.53E-13	4	58	No hit	No description
PROSITE profile	PS51039	7.664	10	56	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	2.1E-10	11	53	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	4.6E-14	13	51	IPR000058	Zinc finger, AN1-type
SMART	SM00154	3.0E-4	13	52	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	1.8E-10	91	148	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	3.01E-9	93	144	No hit	No description
PROSITE profile	PS51039	7.728	98	145	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	3.6E-8	101	140	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.073	101	142	IPR000058	Zinc finger, AN1-type
SMART	SM00355	0.37	226	249	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	228	249	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	8.767	263	291	IPR007087	Zinc finger, C2H2
SMART	SM00355	8	263	286	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	265	286	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MGTPEFPNLG RHCSVGDCNQ IDFLPFTCDR CDHVFCLQHR SYTSHKCPNA DQKDVTVLIC 60 PLCAKGVRLN PNEDPNITWD SHVNTDCDPS NYQKVTKKKK CPVPGCRETL TFSNTIRCKD 120 CTKEHCLKHR FGPDHKCPGP RKPDSTFPFG NMLRRSQKAE PRSNSSSNNS SSWWSSSLLT 180 VASNFKSSAE AGMQKLSTAT TQAIQKAKDG ISTGSSSSSS SGDLVEQCVQ CPARFPTVGA 240 LIEHCEKSHQ SNSQPNRSRV TVDVCPKCSK AFRDPVLLVE HVERDHGGTS RA

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00306	DAP	Transfer from AT2G41835	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB07G25050.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, dehydration and salt stress. {ECO:0000269\|PubMed:17033811}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT829129	0.0	CT829129.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN113H10, full insert sequence.
GenBank	HQ324818	0.0	HQ324818.1 Oryza sativa Japonica Group clone KCS176H09 zinc finger AN1 and C2H2 domain-containing protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006657863.1	0.0	PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
Swissprot	Q0D5B9	1e-180	SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBL	J3MM73	0.0	J3MM73_ORYBR; Uncharacterized protein
STRING	OB07G25050.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4763	33	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41835.1	1e-117	C2H2 family protein

Link Out ? help Back to Top
Entrez Gene	102709475

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]