PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB07G21030.1

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 944aa MW: 107141 Da PI: 6.8375

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB07G21030.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.1	9.2e-21	93	179	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY +Y+ + GF ++++++++ +g +++tf Csk g+++ ++ + ++++++ t+tgCkak+ vk + +++wev+ leleHnH+l OB07G21030.1 93 QFYVSYGCHSGFGITRRSNNTF--DGFRYRSTFICSKGGQSRLRSGA--TKSTRKRGTKTGCKAKMIVKDAHfQNRWEVIVLELEHNHPLD 179 6**************99988..9999***********9999..77788889***********9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-18	93	180	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.3E-19	306	389	IPR018289	MULE transposase domain
Pfam	PF04434	1.9E-7	578	610	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.409	578	614	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.8E-4	589	616	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 944 aa Download sequence Send to blast
MAVMRMDSED VLANLAQGMM MYFLCFQADK IIIWGPMEEE YNTESSNEED MQEDDGEKEG 60 NVTEGDVFKP VDIDPALVPK VGMVFESEED AFQFYVSYGC HSGFGITRRS NNTFDGFRYR 120 STFICSKGGQ SRLRSGATKS TRKRGTKTGC KAKMIVKDAH FQNRWEVIVL ELEHNHPLDP 180 SLLKFKKQLK NSPFLQNPPR ISEAPESRLA AAPSSRGGDS GIPLSTQIEF RTKIDRNRKL 240 KLAEGDLDAL LSFLNTMQDQ NPYFFYSLDM NEQGQLRNVF WADAKSRSSY NYFGDVVAID 300 VRNFSDQYEI QFVSFVGTNH HSQQVLLGCG LLAGRSLGAY VWLFDTWLRC MNGTPPPSVI 360 TNYCHDVAIA VKKVFPNAHH RFCLLHILNE LPEKLEGTEK KDELVSTFTS LAFDSITMPG 420 FEKEWQEMIE QFHLEGNEWL SKLYEVRTQW APVYIKDSFW AGMSITERSD SAADYFDGWL 480 MPDTSVKMFV EQYESAVKVK LEKENYEDLR SSQMRPPVMT GLPAEEQAAK VYTIEIFEKF 540 LDEIGHSFHC SYSIVNRNNS VVTYIVSDQI DQTKKVDYKV AYDNVEDDIW CLCRLFQFKG 600 ILCRHALTVL RQELVLMIPP KYIIHRWCKD CKQTCSSMSQ PVSLSNQETG GYDDLYKLAH 660 QYFAEVVEFG SVNLDSKNYA LSIMREIRDK VISYEKSLRD QRVDSHVSTA NFAYNPVNED 720 FNDDALPISL STKGWDVMQG QSKRTRKKKL ATPNVLDTLK KKTKRAYNKR RNATANTLNT 780 AVTTTESIPD GTNMQHNQVN EGWPLTSTGA PEAFPYGVET ISFDLSQYNN APSFHWPESS 840 SRSQLQNLPE AGQEKCLGKG TRGKRCHNSQ PATSIMVLPF QGTAGAVAGK KLGAHLAHAP 900 ARAPLRGMHS ISYRTVTAEL SPRLIRAACE ARRLVARSSR KETE

Sequence ? help Back to Top

Protein Sequence Length: 944 aa Download sequence Send to blast

MAVMRMDSED VLANLAQGMM MYFLCFQADK IIIWGPMEEE YNTESSNEED MQEDDGEKEG  60
NVTEGDVFKP VDIDPALVPK VGMVFESEED AFQFYVSYGC HSGFGITRRS NNTFDGFRYR  120
STFICSKGGQ SRLRSGATKS TRKRGTKTGC KAKMIVKDAH FQNRWEVIVL ELEHNHPLDP  180
SLLKFKKQLK NSPFLQNPPR ISEAPESRLA AAPSSRGGDS GIPLSTQIEF RTKIDRNRKL  240
KLAEGDLDAL LSFLNTMQDQ NPYFFYSLDM NEQGQLRNVF WADAKSRSSY NYFGDVVAID  300
VRNFSDQYEI QFVSFVGTNH HSQQVLLGCG LLAGRSLGAY VWLFDTWLRC MNGTPPPSVI  360
TNYCHDVAIA VKKVFPNAHH RFCLLHILNE LPEKLEGTEK KDELVSTFTS LAFDSITMPG  420
FEKEWQEMIE QFHLEGNEWL SKLYEVRTQW APVYIKDSFW AGMSITERSD SAADYFDGWL  480
MPDTSVKMFV EQYESAVKVK LEKENYEDLR SSQMRPPVMT GLPAEEQAAK VYTIEIFEKF  540
LDEIGHSFHC SYSIVNRNNS VVTYIVSDQI DQTKKVDYKV AYDNVEDDIW CLCRLFQFKG  600
ILCRHALTVL RQELVLMIPP KYIIHRWCKD CKQTCSSMSQ PVSLSNQETG GYDDLYKLAH  660
QYFAEVVEFG SVNLDSKNYA LSIMREIRDK VISYEKSLRD QRVDSHVSTA NFAYNPVNED  720
FNDDALPISL STKGWDVMQG QSKRTRKKKL ATPNVLDTLK KKTKRAYNKR RNATANTLNT  780
AVTTTESIPD GTNMQHNQVN EGWPLTSTGA PEAFPYGVET ISFDLSQYNN APSFHWPESS  840
SRSQLQNLPE AGQEKCLGKG TRGKRCHNSQ PATSIMVLPF QGTAGAVAGK KLGAHLAHAP  900
ARAPLRGMHS ISYRTVTAEL SPRLIRAACE ARRLVARSSR KETE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB07G21030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003956	0.0	AP003956.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1457_D07.
GenBank	AP004259	0.0	AP004259.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0005E02.
GenBank	AP014963	0.0	AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015695371.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1
TrEMBL	J3ML21	0.0	J3ML21_ORYBR; Uncharacterized protein
STRING	OB07G21030.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-110	FAR1-related sequence 6