PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G17770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 10212.9 Da PI: 10.1818 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.5 | 4e-10 | 30 | 64 | 3 | 38 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38 +WT+eEd ll ++ k+ ++W++Iar m+ R++ OB07G17770.1 30 AWTPEEDALLQRLAKENRFRRWSRIARSMP-LRSAR 64 7*****************************.99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 0.0047 | 27 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-9 | 30 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.54E-9 | 30 | 63 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-10 | 30 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.61E-9 | 30 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.387 | 31 | 74 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MDPEVNMVSS PPAPTVPRPR FVVRLKLPPA WTPEEDALLQ RLAKENRFRR WSRIARSMPL 60 RSARICLDGY RIVTDGCYNS NVFYFVCS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G17770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005200 | 3e-46 | AP005200.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0673E01. | |||
GenBank | AP014963 | 3e-46 | AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012615 | 3e-46 | CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645964.1 | 6e-22 | transcription factor MYB73 | ||||
TrEMBL | J3MK45 | 1e-57 | J3MK45_ORYBR; Uncharacterized protein | ||||
STRING | OB07G17770.1 | 2e-58 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12569 | 20 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 5e-09 | myb domain protein 73 |