PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G17140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 248aa MW: 26215.1 Da PI: 3.7147 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 55 | 2.8e-17 | 12 | 98 | 1 | 86 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkat 86 lppG+ F+P+d+ lv yL ++++g++ l+l+ +i e+d +++ Pw+L + + ++ +e +fF+ ++ k+ +gkr++r + g+W+ + OB07G17140.1 12 LPPGLTFQPRDDVLVGSYLLRRIQGTRpLPLQGAILEADPLSAPPWELLAGF-GRGDEAFFFADARAKNGKGKRQKRtVEGGGFWQGQ 98 79**********************9987899889**************8554.45789*******************555599**965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-18 | 9 | 102 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 15.906 | 12 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-8 | 13 | 99 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MAPGGAVAED ALPPGLTFQP RDDVLVGSYL LRRIQGTRPL PLQGAILEAD PLSAPPWELL 60 AGFGRGDEAF FFADARAKNG KGKRQKRTVE GGGFWQGQRA CVDGEKLLVP GGDGVAELPD 120 LIALPSEEAD PQPLLPPAPA ALVRFADDAA GASNDSSMVS TQPPELTVLP LPAEEADAAP 180 APSGISWPDD QSDYSSSIID GEALMWSDYD FPENIDEVLS CIDFTATADQ CSSLDFCLDN 240 LFDDLQAD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G17140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | J3MJY2 | 1e-174 | J3MJY2_ORYBR; Uncharacterized protein | ||||
STRING | OB07G17140.1 | 1e-175 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP802 | 22 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.2 | 3e-10 | NAC domain containing protein 50 |