PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB07G14710.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 470aa    MW: 49835.9 Da    PI: 3.9549
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB07G14710.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM44.74.4e-142413026128
           NAM  26 kkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgk....dkevlsk......kgelvglkktLvfykg 111
                   ++l+l  vi e+d +++ Pw+L ++  +  +e +fF++++ k  +g+r++r +   g Wk +      ++           + e  + k +L f+ +
  OB07G14710.1  24 EPLPLGGVILEADPLSASPWTLLAE-GGWGDEAFFFAEARAKDGKGSRQKRtVEGGGCWKGQRMvvdgER----LlvadrdGMEIAWRKYVLSFF-A 114
                   4566767899************733.3456799******************5555899**7654232122....122345445557888899**9.4 PP

           NAM 112 rapkgektdWvmheyrl 128
                   + +kg ++ Wvmhey++
  OB07G14710.1 115 DGEKG-SSGWVMHEYAI 130
                   55554.89*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.4541149IPR003441NAC domain
SuperFamilySSF1019411.22E-1922149IPR003441NAC domain
PfamPF023655.8E-737129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MALSQKLMQL IMICQRASSV GNGEPLPLGG VILEADPLSA SPWTLLAEGG WGDEAFFFAE  60
ARAKDGKGSR QKRTVEGGGC WKGQRMVVDG ERLLVADRDG MEIAWRKYVL SFFADGEKGS  120
SGWVMHEYAI TAPPELASSP VRLYRIRFSG HGKNSKKRRR GPECHGGQEG GGREQAAPRR  180
AVEEDALPSQ PIPPPAAAAS FADYSVSDAA DQYSSGVVED SWPVSDDLPP LPGPPPPPAV  240
VTFAEEDFVS DGADQGGSST APPAAAVVSD IADQYYSGVV EDSWLVSDDL SGNDLLEELV  300
LPPLPGPPPP PPALVSSADE DFVSHGADRG SSTVPPPDPA EVVNLAIAND RVSDVMNDAS  360
LVFDDLSEII DETDLSCIDF TETRDDLSCI DFTETTDDLS CIDFTEPMDD LSCIDFTIDD  420
LQSSFIRSAA NELFVCPSEG AEADTGGGSV TSSLVEKHNN SSGVTADRGH
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB07G14710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006658368.11e-102PREDICTED: uncharacterized protein KIAA1522-like
TrEMBLJ3MJ890.0J3MJ89_ORYBR; Uncharacterized protein
STRINGOB07G14710.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80222137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-07NAC domain containing protein 83