PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OB07G11910.1 | ||||||||
Common Name | LOC102705451 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | NAC | ||||||||
Protein Properties | Length: 347aa MW: 38895.2 Da PI: 5.1265 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 155.8 | 1.8e-48 | 36 | 163 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 pGfrFhPtdeelv++yL++k++gk+l++ e+ike+diyk++P+d+ +++ ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++++s+ + OB07G11910.1 36 LPGFRFHPTDEELVTFYLRRKIAGKRLSI-EIIKEMDIYKHDPSDFLkTSTVGSEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRPICSAaG 131 69***************************.89*************96345556789*************************************9977 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + ++glkk+Lv+y+g+a kg+ktdW+mhe+rl OB07G11910.1 132 DGAIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 163 788***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-53 | 35 | 193 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.347 | 35 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-25 | 37 | 163 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MVPSAEMKSR VFEDEVGGGV NLRGEEEEED DDDLVLPGFR FHPTDEELVT FYLRRKIAGK 60 RLSIEIIKEM DIYKHDPSDF LKTSTVGSEK EWYFFCLRGR KYRNSIRPNR VTGSGFWKAT 120 GIDRPICSAA GDGAIGLKKS LVYYRGSAGK GTKTDWMMHE FRLPPPTSSA ADSSPPPSMQ 180 EAEVWTICRI FQRNITHKRQ PQPQLAVAAA APQPDSASSI TGSVESDSNG DDVVEYMNRL 240 QAQHEQHDAP ATASNVNGGY NPHYFHDQWN SNHNMLQPAA AAPEPSPAMA AFQDHLTDHQ 300 SILSSPAPSD QYYKDGYNDD IYRMVMELAD PSLFYDHCRY LDSCTSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-45 | 37 | 194 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-45 | 37 | 194 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-45 | 37 | 194 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-45 | 37 | 194 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-45 | 37 | 194 | 22 | 169 | NAC domain-containing protein 19 |
3swm_B | 5e-45 | 37 | 194 | 22 | 169 | NAC domain-containing protein 19 |
3swm_C | 5e-45 | 37 | 194 | 22 | 169 | NAC domain-containing protein 19 |
3swm_D | 5e-45 | 37 | 194 | 22 | 169 | NAC domain-containing protein 19 |
3swp_A | 5e-45 | 37 | 194 | 22 | 169 | NAC domain-containing protein 19 |
3swp_B | 5e-45 | 37 | 194 | 22 | 169 | NAC domain-containing protein 19 |
3swp_C | 5e-45 | 37 | 194 | 22 | 169 | NAC domain-containing protein 19 |
3swp_D | 5e-45 | 37 | 194 | 22 | 169 | NAC domain-containing protein 19 |
4dul_A | 5e-45 | 37 | 194 | 19 | 166 | NAC domain-containing protein 19 |
4dul_B | 5e-45 | 37 | 194 | 19 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | OB07G11910.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006658263.2 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1-like | ||||
Swissprot | Q9SK55 | 4e-76 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | J3MIF9 | 0.0 | J3MIF9_ORYBR; Uncharacterized protein | ||||
STRING | OB07G11910.1 | 0.0 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1191 | 38 | 129 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 3e-73 | NAC domain containing protein 42 |
Link Out ? help Back to Top | |
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Entrez Gene | 102705451 |