PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB06G34290.1

Common Name

LOC102709287

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

ARF

Protein Properties

Length: 1160aa MW: 128071 Da PI: 6.5121

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB06G34290.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.6	9.9e-23	157	258	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +++++ OB06G34290.1 157 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RDEKQ 249 99***************************954.4444.49********************************************..56888 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +l+++++r+ OB06G34290.1 250 QLLLGIRRA 258 89**997 PP
2	Auxin_resp	118	8e-39	283	366	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g+sdldpvrW+nS+Wr+L+ OB06G34290.1 283 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 366 79********************************9*******************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	3.27E-43	146	286	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	1.3E-41	149	272	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.67E-19	156	248	No hit	No description
PROSITE profile	PS50863	11.801	157	259	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.2E-20	157	258	IPR003340	B3 DNA binding domain
SMART	SM01019	1.6E-22	157	259	IPR003340	B3 DNA binding domain
Pfam	PF06507	1.5E-33	283	366	IPR010525	Auxin response factor
Pfam	PF02309	4.7E-9	1024	1110	IPR033389	AUX/IAA domain
PROSITE profile	PS51745	27.52	1025	1109	IPR000270	PB1 domain
SuperFamily	SSF54277	5.69E-7	1037	1104	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1160 aa Download sequence Send to blast
MMKQAQPQQQ QPPVTASSTV TATAAAVTSA MAAAAAVGSG CEGEKKAPAI NSELWHACAG 60 PLVSLPPAGS LVVYFPQGHS EQVAASMQKD VDAHVPSYPN LPSKLICLLH NVTLHADPET 120 DEVYAQMTLQ PVTSYGKEAL QLSELALKQA RPQTEFFCKT LTASDTSTHG GFSVPRRAAE 180 KIFPPLDFSM QPPAQELQAR DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS 240 VIFVRDEKQQ LLLGIRRANR QPTNISSSVL SSDSMHIGIL AAAAHAAANN SPFTIFYNPR 300 ASPTEFVIPF AKYQKAVYGN QISLGMRFRM MFETEELGTR RYMGTITGIS DLDPVRWKNS 360 QWRNLQVGWD ESAAGERRNR VSIWEIEPVA APFFICPPPF FGAKRPRQLD DESSEMENLL 420 KRAMPWLGEE ICIKDPQTQN TIMPGLSLVQ WMNMNMQQSS SFANTAMQSD YLRSLSNPNM 480 QNLGAADLSR QLCLQNQLLQ QNNIQFNTPK LSQQMQPVNE LSKATIPLNQ LGVSTKPQEQ 540 IHDASNLARQ QPSMNHILPL SQAQASFGQA QVLVQNQMQQ QHASSTQGQQ PTTSQPLLLP 600 QQQQQQQQQQ KLLQQQQQQQ QLLLQQQQLQ QQQQLNKVPS QLPSLANQQL QLSDQQLQLQ 660 LLQKLQQQQQ SLLSQPGVTL AQLPLIQEQQ KLLLDMQQQL SNSQTLPQQQ MMPQQSTRVP 720 SQNASLPPPV QQEPQQKLLQ KQAMLADTSE AAVPLTTSAN VISTMGSPLM TAGATHSVLT 780 EEIPSCSTSP STANGGHLLQ PILGRNKHCS MINTEKVPQP AAPMSVPSSL EAVTATPRMI 840 KESPKLNQNV KQTVVASKLA NAGAGSQNYV NNPPPTDYLE TASSATSVWL SQNDGLLHPN 900 FPMSNFSQPQ MFKDAPPETE IHPPNTSNNA LFGINSDGQL GFPMGTDDFL SNGIDAAKYE 960 NHISTEIDNG YRIPKDAQQE ISSSMVSQSF GASDMAFNSI DSALNDGGFL NRSSWPPAPP 1020 LKRMRTFTKV YKRGAVGRSI DISQFSGYDE LKHALARMFS IEGQLEERQR IGWKLVYKDH 1080 EDDILLLGDD PWEEFVGCVR CIRILSPQEV QQMSLEGCDL GNNSIPPNQA CSSSDGGNAW 1140 RARCDQNSGN PSNGSYEQFE

Sequence ? help Back to Top

Protein Sequence Length: 1160 aa Download sequence Send to blast

MMKQAQPQQQ QPPVTASSTV TATAAAVTSA MAAAAAVGSG CEGEKKAPAI NSELWHACAG  60
PLVSLPPAGS LVVYFPQGHS EQVAASMQKD VDAHVPSYPN LPSKLICLLH NVTLHADPET  120
DEVYAQMTLQ PVTSYGKEAL QLSELALKQA RPQTEFFCKT LTASDTSTHG GFSVPRRAAE  180
KIFPPLDFSM QPPAQELQAR DLHDNVWTFR HIYRGQPKRH LLTTGWSLFV SGKRLFAGDS  240
VIFVRDEKQQ LLLGIRRANR QPTNISSSVL SSDSMHIGIL AAAAHAAANN SPFTIFYNPR  300
ASPTEFVIPF AKYQKAVYGN QISLGMRFRM MFETEELGTR RYMGTITGIS DLDPVRWKNS  360
QWRNLQVGWD ESAAGERRNR VSIWEIEPVA APFFICPPPF FGAKRPRQLD DESSEMENLL  420
KRAMPWLGEE ICIKDPQTQN TIMPGLSLVQ WMNMNMQQSS SFANTAMQSD YLRSLSNPNM  480
QNLGAADLSR QLCLQNQLLQ QNNIQFNTPK LSQQMQPVNE LSKATIPLNQ LGVSTKPQEQ  540
IHDASNLARQ QPSMNHILPL SQAQASFGQA QVLVQNQMQQ QHASSTQGQQ PTTSQPLLLP  600
QQQQQQQQQQ KLLQQQQQQQ QLLLQQQQLQ QQQQLNKVPS QLPSLANQQL QLSDQQLQLQ  660
LLQKLQQQQQ SLLSQPGVTL AQLPLIQEQQ KLLLDMQQQL SNSQTLPQQQ MMPQQSTRVP  720
SQNASLPPPV QQEPQQKLLQ KQAMLADTSE AAVPLTTSAN VISTMGSPLM TAGATHSVLT  780
EEIPSCSTSP STANGGHLLQ PILGRNKHCS MINTEKVPQP AAPMSVPSSL EAVTATPRMI  840
KESPKLNQNV KQTVVASKLA NAGAGSQNYV NNPPPTDYLE TASSATSVWL SQNDGLLHPN  900
FPMSNFSQPQ MFKDAPPETE IHPPNTSNNA LFGINSDGQL GFPMGTDDFL SNGIDAAKYE  960
NHISTEIDNG YRIPKDAQQE ISSSMVSQSF GASDMAFNSI DSALNDGGFL NRSSWPPAPP  1020
LKRMRTFTKV YKRGAVGRSI DISQFSGYDE LKHALARMFS IEGQLEERQR IGWKLVYKDH  1080
EDDILLLGDD PWEEFVGCVR CIRILSPQEV QQMSLEGCDL GNNSIPPNQA CSSSDGGNAW  1140
RARCDQNSGN PSNGSYEQFE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldu_A	1e-170	46	387	47	388	Auxin response factor 5
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB06G34290.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB071296	0.0	AB071296.1 Oryza sativa OsARF7a mRNA for auxin response factor 7a, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006656453.2	0.0	PREDICTED: auxin response factor 19
Swissprot	Q0D9R7	0.0	ARFS_ORYSJ; Auxin response factor 19
TrEMBL	J3MHD5	0.0	J3MHD5_ORYBR; Auxin response factor
STRING	OB06G34290.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1409	35	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	auxin response factor 19

Link Out ? help Back to Top
Entrez Gene	102709287

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Zhang S, et al. The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1. Plant Cell Environ., 2015. 38(4): p. 638-54 [PMID:24995795]