PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OB06G31430.1

Common Name

LOC102700812

Organism

Oryza brachyantha

Taxonomic ID

4533

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 274aa MW: 29461.8 Da PI: 6.3078

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OB06G31430.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51.7	1.9e-16	119	171	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 e kr rr+ +NRe+ArrsR+RK+a++ eLe v++L +eN +L +l e +++ OB06G31430.1 119 ETKRIRRMVSNRESARRSRRRKQAQLSELESQVEKLRGENGSLVRQLTESSQQ 171 68***************************************999777666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.4E-16	117	181	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.2E-14	119	170	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.208	119	171	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.0E-12	121	171	No hit	No description
SuperFamily	SSF57959	6.83E-12	121	172	No hit	No description
PROSITE pattern	PS00036	0	124	139	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MKKSESELQL EAFIREDAGD GDGDGEMMPS SLGFGQSYGS SNHHHLWWPE TEGVGARAAP 60 RPAASATVES PAPASISAAS PRATASANGG AAESDSDSDS ESLLETERSP RLRGTRSTET 120 KRIRRMVSNR ESARRSRRRK QAQLSELESQ VEKLRGENGS LVRQLTESSQ QFTAAVTDNR 180 ILKSDVEALR VKVRMAEDMV ARAAMSCGLG QLGSGLAPLL SSRKMCQALD MLTVTGLDLP 240 RQVQNSPVRS AASLESLDNR ISSEVTSCSA DVWP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	140	RRSRRRKQ
2	135	140	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters (PubMed:11133985). May function as a negative regulator in cold and drought stress responses (PubMed:22189955). {ECO:0000269\|PubMed:11133985, ECO:0000269\|PubMed:22189955}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	OB06G31430.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by cold stress in roots. {ECO:0000269\|PubMed:22189955}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB053474	1e-111	AB053474.1 Oryza sativa mRNA for RISBZ5, complete cds.
GenBank	CT832853	1e-111	CT832853.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA113E18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006657221.1	0.0	PREDICTED: basic leucine zipper 9 isoform X2
Swissprot	Q654B3	1e-108	RSBZ5_ORYSJ; bZIP transcription factor RISBZ5
TrEMBL	J3MGJ9	0.0	J3MGJ9_ORYBR; Uncharacterized protein
STRING	OB06G31430.1	0.0	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2095	37	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	4e-27	basic leucine zipper 9

Link Out ? help Back to Top
Entrez Gene	102700812

Publications ? help Back to Top
Onodera Y,Suzuki A,Wu CY,Washida H,Takaiwa F A rice functional transcriptional activator, RISBZ1, responsible for endosperm-specific expression of storage protein genes through GCN4 motif. J. Biol. Chem., 2001. 276(17): p. 14139-52 [PMID:11133985] Liu C,Wu Y,Wang X bZIP transcription factor OsbZIP52/RISBZ5: a potential negative regulator of cold and drought stress response in rice. Planta, 2012. 235(6): p. 1157-69 [PMID:22189955]