PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G29780.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 534aa    MW: 55741.3 Da    PI: 5.0704
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G29780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.36.9e-1290142155
           AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GVrw k+  r+ Ae      n+    + r++lg+f++ eeAa a++ a++ l+g
  OB06G29780.1  90 SCYRGVRWSKSGTRFIAE---T--NNplsATDRVWLGTFDSGEEAAWAYDTAARVLRG 142
                   79****************...6..6675344***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.99E-1690151IPR016177DNA-binding domain
PfamPF008475.4E-990142IPR001471AP2/ERF domain
SMARTSM003806.8E-1591156IPR001471AP2/ERF domain
PROSITE profilePS5103216.85891150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-1991151IPR001471AP2/ERF domain
CDDcd000181.97E-1592152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MEPREVTVRK FTEVLVDYAQ QVAELAVWRV EKRADDKGKG VAPAEGAGAG EVVVVPVVAG  60
KRRVGKAFVA PAVTVGGSGS GRRRKDGNGS CYRGVRWSKS GTRFIAETNN PLSATDRVWL  120
GTFDSGEEAA WAYDTAARVL RGSKATTNFS DAPPTPGLTP EMRAMLEFFA NACSERGEGG  180
QVPCSLALST SARAIEAPAN GSPLLLLEAP PPPPPDLEPG VRVQRGGQRG RTPSPKTVTE  240
NDPSASSSAL VLVPAAVPDR ALTSDVAPVM ARALPSAVAT EAPLLLLPPP APALVAGAAF  300
QQGGGERGRG RGRGGGRGRA PGSLRGGGGG RGPGRGRSAN DPRFSTLYAH GGFSSSPESS  360
LAAPPPPPPP TAPAASHSFY QPVIPPGGVI TNYAVHEAPD FDPDTFYDEL EDDDDDEPVL  420
LLRKKTELLG VHTSPDRPQR SMEVITEEDD LMHVDVVPSS SQGAGAAPSS SSQGTSNVRA  480
LLNFDLNEPA LDDDDDDDAG LLMLTCNVAS QQVNLSGFLM IKELSLLRSS RKFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1308317RGRGRGGGRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G29780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3MG340.0J3MG34_ORYBR; Uncharacterized protein
STRINGOB06G29780.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1378799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.13e-14ethylene response factor 7