PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G29590.1
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 522aa    MW: 57893.8 Da    PI: 8.7996
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G29590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.6e-13112201397
                   EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
            B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                   k l ++d      + +p kf+++h  +  +++++  ++ ++ g+  +v++  ++ +  ++l++GW  F  a++L eg +++F+++g++ f  +v vf
  OB06G29590.1 112 KLLQQEDL---EKMKIPEKFVQQHltETCTNSHQNAIILSPLGKFCRVEV--EREQPDMLLRDGWAAFLAAHDLSEGNILLFRYEGNMVF--TVEVF 201
                   55533333...3478*********995555677789**************..999999****************************9999..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-18104206IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-17106210IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.052107204IPR003340B3 DNA binding domain
CDDcd100171.47E-14108201No hitNo description
SMARTSM010198.8E-4110204IPR003340B3 DNA binding domain
PfamPF023621.3E-9118201IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-8282354IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-6283354IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MALSAGVRRS KYAAPLLSPA CLRRLCVPGE FVAALGPGDA GEAAAVVLVV GPLGKVWRVE  60
LAWATSEGWT VVLRLERRGV ASLRAFDPCC CLARFCTPHT GMKTKDRPRF IKLLQQEDLE  120
KMKIPEKFVQ QHLTETCTNS HQNAIILSPL GKFCRVEVER EQPDMLLRDG WAAFLAAHDL  180
SEGNILLFRY EGNMVFTVEV FLENGCLKEY TTATLYLTDG SKGRSVAPQQ CVTKAEVSPV  240
KRKRTQRSGG ACLEESSRKS RASPISVKKV ESHMKHLSIV PQNSFTKEMT SYSVHSLLAV  300
KGTFCSQIGL LEASTITLKI SMKNKGSWRV AFKTANTYGY INGPGWRKFC LEKKHEFSHS  360
LDENNLGILT ILLHSNLQIP WDTAWQREQC KSWLLPGSCH LYNDSINVFK WWVHQNSIVY  420
GQKRPNDEPL GESEMRLKII TIIERVLVRV CVTNVSQVAI SVLGNGWCVS SCAGDLKSIS  480
VNGGGIVTRL GEELRSGRSR MSGDDIEYDL AHGGATPCGM ES
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G29590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0047926e-92AP004792.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0505A04.
GenBankAP0149626e-92AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015693648.10.0PREDICTED: putative B3 domain-containing protein Os06g0632500
SwissprotQ67VL70.0Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBLJ3MG150.0J3MG15_ORYBR; Uncharacterized protein
STRINGOB06G29590.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.14e-10B3 family protein