PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB06G26180.1
Common NameLOC102715865
Organism
Oryza brachyantha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HB-other
Protein Properties Length: 555aa    MW: 57948.9 Da    PI: 6.6242
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB06G26180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox25.42.4e-084805171954
                   HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
      Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                   Fe+   +yp+ +e+  LA++ gL+ +qV++WF N R +
  OB06G26180.1 480 FENflRPYPKDSEKDMLAARSGLSRSQVSNWFINARVR 517
                   7766689*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075263.8E-12283413IPR006563POX domain
PROSITE profilePS5007111.791458521IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-25460534IPR009057Homeodomain-like
CDDcd000861.20E-11461522No hitNo description
SuperFamilySSF466891.71E-15461531IPR009057Homeodomain-like
SMARTSM003895.4E-7461525IPR001356Homeobox domain
PfamPF059201.4E-15478517IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MSSSNPSYQQ LGLDAMSCCF VTGGGGGMVG GAEVAPFLCA NVAHDGGFGF GFGDVDGEFL  60
VGGMMMVASP AAAGGGDELA CAVPLRLGSG GHGESMSEDG VHAAAAAAAA AESCSTVHWA  120
VIPAAADAGS VEFGYGPSSG VTIAQPSRMG RLAREAPCGG SWIYGGPGNG VAPFHDAYYP  180
SGFSYGAGVG FSNPFDATSA TAPEASELSL RLGAKRSSPG SMANASSEVS CSGLTHVSSG  240
GGFGYHQAAG GAALFHPPHG DGELRQVYHP QAHPTAPLHF SQVVSRSGLA HIAQELLNGF  300
VACLLQDVAT DAASGIDGGE ASPALSSALS ARTPPEEQPY AGARWAAEAR RLRKLLQLMD  360
QKLNQCLDEM QSTASKFNSM VRSGSAIATG GGLSAPFAGR AVAAAYRRVR RRVMGQLMAA  420
ATQQQQRPTA ALEEKERSWE SSFIQKHWAL QQLRRGDQQS WRPQRGLPEK SVAVLKAWMF  480
ENFLRPYPKD SEKDMLAARS GLSRSQVSNW FINARVRLWK PMIEDMYEEL NKTSGGSTDG  540
VAEMEQFSNK GGVIT
Cis-element ? help Back to Top
SourceLink
PlantRegMapOB06G26180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3586151e-104AK358615.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1080B11.
GenBankAK3601441e-104AK360144.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1111H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657056.10.0PREDICTED: uncharacterized protein LOC102715865
RefseqXP_015693999.10.0PREDICTED: uncharacterized protein LOC102715865
TrEMBLJ3MF240.0J3MF24_ORYBR; Uncharacterized protein
STRINGOB06G26180.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31433365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.12e-51homeobox gene 1